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PDB code:

Information on SUBCLASS 5.12.1

Subclass Accession number: 3237 Subclass: 5.12.1 Type: EH beta-alpha DB: ArchDB95 Image coordinates: Consensus coordinates:

Number of loops: 21 Average sequence ID (%) : 27.5 +/- 23.7 Average RMSD (Å) : 0.471 +/- 0.115 Consensus geometry d (Å): 13 delta (°): 45-90 theta (°): 135-180 rho (°): 270-315

Loops included in this Subclass

Loop	PDB	Chain	Start	End	Sequence	Sec Struct	Ramachandran
1a53_*_206	1a53	-	207	220	KVAESGISERNEIE	EEEES----HHHHH	bbxbevxabaaaaa
1d3g_A_330	1d3g	A	330	343	IIGVGGVSSGQDAL	EEEESS--SHHHHH	bxxbevxabaaaaa
1eep_A_258	1eep	A	259	272	IIADGGIRFSGDVV	EEEES---SHHHHH	bbxbevxabaaaaa
1f76_A_292	1f76	A	292	305	IIGVGGIDSVIAAR	EEEESS--SHHHHH	bbxbevxabaaaaa
1gox_*_282	1gox	-	282	295	VFLDGGVRRGTDVF	EEEESS--SHHHHH	bbbbevxabaaaaa
1h5y_A_201	1h5y	A	201	214	VIASGGAGRVEHFY	EEEES---SHHHHH	bxxbMgxabaaaaa
1h5y_A_80	1h5y	A	80	93	VLVGGGVRSLEDAT	EEEESS--SHHHHH	bbbbMlxabaaaaa
1jvn_A_496	1jvn	A	496	509	VIASSGAGVPEHFE	EEE-S---SHHHHH	bxxbMgxabaaaaa
1ka9_F_199	1ka9	F	199	212	VIASGGAGRMEHFL	EEEES---SHHHHH	bbxbMgpNbaaaaa
1mzh_A_277	1mzh	A	278	291	VKASGGIRDLETAI	EEEESS--SHHHHH	bbxbevxabaaaaa
1o0y_A_206	1o0y	A	207	220	VKASGGIRTFEDAV	EEEESS--SHHHHH	bbxbMvxabaaaaa
1p0k_A_253	1p0k	A	254	267	MIASGGLQDALDVA	EEEESS--SHHHHH	bbbbMvxabaaaaa
1pii_*_210	1pii	-	211	224	VISESGINTYAQVR	EEEES----HHHHH	bbxbMvxabaaaaa
1ps9_A_283	1ps9	A	283	296	LVTTNRINDPQVAD	EEE-SS--SHHHHH	bbbbMlbabaaaaa
1qo2_A_190	1qo2	A	191	204	VLAAGGISSENSLK	EEEESS--SHHHHH	bbxbMvbabaaaaa
1qop_A_208	1qop	A	208	221	ALQGFGISSPEQVS	EEEESS--SHHHHH	xbxbevxNbaaaaa
1thf_D_198	1thf	D	198	211	IIASGGAGKMEHFL	EEEES---SHHHHH	bxxbegpabaaaaa
1ub3_A_178	1ub3	A	179	192	VKAAGGIRDRETAL	EEEESS--SHHHHH	bbxbMvxabaaaaa
1vc4_A_210	1vc4	A	211	224	LVAESGYSRKEELK	EEEES---SHHHHH	xbxbevxNbaaaaa
1vhn_A_186	1vhn	A	186	199	TFVSGDIFTPEDAK	EEEESS--SHHHHH	bbxbelbabaaaaa
1zfj_A_339	1zfj	A	340	353	IIADGGIKYSGDIV	EEE-S---SHHHHH	bbxbevxabaaaaa

PDB ligands within a cut-off distance of 6 Å in this subclass

Loop	PDB	Chain	Ligands	Residue
1a53_*_206	1a53	*	IGPINDOLE-3-GLYCEROL PHOSPHATE	A - 209
1a53_*_206	1a53	*	IGPINDOLE-3-GLYCEROL PHOSPHATE	E - 210
1a53_*_206	1a53	*	IGPINDOLE-3-GLYCEROL PHOSPHATE	S - 211
1a53_*_206	1a53	*	IGPINDOLE-3-GLYCEROL PHOSPHATE	G - 212
1a53_*_206	1a53	*	IGPINDOLE-3-GLYCEROL PHOSPHATE	I - 213
1d3g_A_330	1d3g	A	FMNFLAVIN MONONUCLEOTIDE	V - 333
1d3g_A_330	1d3g	A	FMNFLAVIN MONONUCLEOTIDE	G - 334
1d3g_A_330	1d3g	A	FMNFLAVIN MONONUCLEOTIDE	G - 335
1d3g_A_330	1d3g	A	FMNFLAVIN MONONUCLEOTIDE	V - 336
1d3g_A_330	1d3g	A	ACTACETATE ION	E - 344
1d3g_A_330	1d3g	A	ACTACETATE ION	A - 348
1f76_A_292	1f76	A	MSESELENOMETHIONINE	I - 293
1f76_A_292	1f76	A	FMNFLAVIN MONONUCLEOTIDE	V - 295
1f76_A_292	1f76	A	FMNFLAVIN MONONUCLEOTIDE	G - 296
1f76_A_292	1f76	A	FMNFLAVIN MONONUCLEOTIDE	G - 297
1f76_A_292	1f76	A	FMNFLAVIN MONONUCLEOTIDE	I - 298
1gox_*_282	1gox	*	FMNFLAVIN MONONUCLEOTIDE	D - 285
1gox_*_282	1gox	*	FMNFLAVIN MONONUCLEOTIDE	G - 286
1gox_*_282	1gox	*	FMNFLAVIN MONONUCLEOTIDE	G - 287
1gox_*_282	1gox	*	FMNFLAVIN MONONUCLEOTIDE	V - 288
1gox_*_282	1gox	*	FMNFLAVIN MONONUCLEOTIDE	R - 289
1h5y_A_80	1h5y	A	PO4PHOSPHATE ION	G - 83
1h5y_A_80	1h5y	A	GOLGLYCEROL	G - 83
1h5y_A_80	1h5y	A	PO4PHOSPHATE ION	G - 84
1h5y_A_80	1h5y	A	GOLGLYCEROL	G - 84
1h5y_A_80	1h5y	A	PO4PHOSPHATE ION	G - 85
1h5y_A_80	1h5y	A	PO4PHOSPHATE ION	V - 86
1h5y_A_80	1h5y	A	PO4PHOSPHATE ION	R - 87
1h5y_A_201	1h5y	A	PO4PHOSPHATE ION	S - 204
1h5y_A_201	1h5y	A	GOLGLYCEROL	S - 204
1h5y_A_201	1h5y	A	PO4PHOSPHATE ION	G - 205
1h5y_A_201	1h5y	A	PO4PHOSPHATE ION	G - 206
1h5y_A_201	1h5y	A	PO4PHOSPHATE ION	A - 207
1p0k_A_253	1p0k	A	PO4PHOSPHATE ION	S - 257
1p0k_A_253	1p0k	A	PO4PHOSPHATE ION	G - 258
1p0k_A_253	1p0k	A	PO4PHOSPHATE ION	G - 259
1p0k_A_253	1p0k	A	PO4PHOSPHATE ION	L - 260
1pii_*_210	1pii	*	PO4PHOSPHATE ION	E - 214
1pii_*_210	1pii	*	PO4PHOSPHATE ION	S - 215
1pii_*_210	1pii	*	PO4PHOSPHATE ION	G - 216
1pii_*_210	1pii	*	PO4PHOSPHATE ION	I - 217
1pii_*_210	1pii	*	PO4PHOSPHATE ION	N - 218
1ps9_A_283	1ps9	A	FMNFLAVIN MONONUCLEOTIDE	T - 286
1ps9_A_283	1ps9	A	FMNFLAVIN MONONUCLEOTIDE	N - 287
1ps9_A_283	1ps9	A	FMNFLAVIN MONONUCLEOTIDE	R - 288
1ps9_A_283	1ps9	A	FMNFLAVIN MONONUCLEOTIDE	I - 289
1qo2_A_190	1qo2	A	MSESELENOMETHIONINE	S - 202
1qo2_A_190	1qo2	A	MSESELENOMETHIONINE	L - 203
1qo2_A_190	1qo2	A	MSESELENOMETHIONINE	K - 204
1qo2_A_190	1qo2	A	MSESELENOMETHIONINE	A - 206
1qo2_A_190	1qo2	A	MSESELENOMETHIONINE	Q - 207
1qo2_A_190	1qo2	A	MSESELENOMETHIONINE	K - 208
1qo2_A_190	1qo2	A	MSESELENOMETHIONINE	H - 210
1qop_A_208	1qop	A	IPLINDOLE-3-PROPANOL PHOSPHATE	G - 211
1qop_A_208	1qop	A	IPLINDOLE-3-PROPANOL PHOSPHATE	F - 212
1qop_A_208	1qop	A	IPLINDOLE-3-PROPANOL PHOSPHATE	G - 213
1qop_A_208	1qop	A	IPLINDOLE-3-PROPANOL PHOSPHATE	I - 214
1thf_D_198	1thf	D	PO4PHOSPHATE ION	S - 201
1thf_D_198	1thf	D	PO4PHOSPHATE ION	G - 202
1thf_D_198	1thf	D	PO4PHOSPHATE ION	G - 203
1thf_D_198	1thf	D	PO4PHOSPHATE ION	A - 204
1ub3_A_178	1ub3	A	HPD1-HYDROXY-PENTANE-3,4-DIOL-5-PHOSPHATE	K - 180
1ub3_A_178	1ub3	A	HPD1-HYDROXY-PENTANE-3,4-DIOL-5-PHOSPHATE	A - 181
1ub3_A_178	1ub3	A	HPD1-HYDROXY-PENTANE-3,4-DIOL-5-PHOSPHATE	A - 182
1ub3_A_178	1ub3	A	HPD1-HYDROXY-PENTANE-3,4-DIOL-5-PHOSPHATE	G - 183
1ub3_A_178	1ub3	A	HPD1-HYDROXY-PENTANE-3,4-DIOL-5-PHOSPHATE	G - 184
1ub3_A_178	1ub3	A	HPD1-HYDROXY-PENTANE-3,4-DIOL-5-PHOSPHATE	I - 185
1ub3_A_178	1ub3	A	HPD1-HYDROXY-PENTANE-3,4-DIOL-5-PHOSPHATE	R - 186
1vhn_A_186	1vhn	A	FMNFLAVIN MONONUCLEOTIDE	S - 189
1vhn_A_186	1vhn	A	FMNFLAVIN MONONUCLEOTIDE	G - 190
1vhn_A_186	1vhn	A	FMNFLAVIN MONONUCLEOTIDE	D - 191
1vhn_A_186	1vhn	A	FMNFLAVIN MONONUCLEOTIDE	I - 192
1vhn_A_186	1vhn	A	FMNFLAVIN MONONUCLEOTIDE	F - 193

PDB Site Annotated loops in this subclass

Loop	PDB	Chain	Site	Residue
1h5y_A_80	1h5y	A	AC1PO4 BINDING SITE FOR RESIDUE A301	G - 84
1qop_A_208	1qop	A	IPLSUBSTRATE ANALOG BOUND TO THE ALPHA ACTIVE SITE.	G - 213

Clusters included in this Subclass

CLUSTER: EH.5.17

CLUSTER: EH.7.192

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