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Information on SUBCLASS 5.13.1
Subclass Accession number: 3238
Subclass: 5.13.1 PSSM
Type: EH beta-alpha
DB: ArchDB95

Image coordinates: Rasmol PDB Jmol PDB
Consensus coordinates: Rasmol PDB Jmol PDB
Number of loops: 21

Average sequence ID (%) : 12.7 +/- 17.1
Average RMSD (Å) : 0.905 +/- 0.329

Consensus geometry
d (Å): 13 delta (°): 45-90 theta (°): 135-180 rho (°): 315-360
Consensus Sequence: hhXXhXpXp
(φψ)-conformation: bbplpabaa
Pattern: [afgiklmv][afgilpv]x[afglmt][aiklv]x[deknqrst]x[adegkqs][dehknqt][acflvy]xx[afilv]x[adegkqrs]
Conservation:-0.1680.485-1.201-0.9291.125-1.1051.429-0.3720.6621.1781.157-1.534-0.8280.988-0.753-0.134
Loops included in this Subclass
LoopPDBChainStartEndSequenceSec StructRamachandran
1a49_A_2381a49   A240255FASFIRKAADVHEVRKEETT--SHHHHHHHHHxxplxabaaaaaaaaa
1dxe_A_941dxe   A96111LIPFVETKEEAELAVAEES---SHHHHHHHHHbbxlbabaaaaaaaaa
1e0t_A_1881e0t   A190205AASFIRKRSDVIEIREEESS--SHHHHHHHHHxxxlpabaaaaaaaaa
1fq0_A_681fq0   A7085GAGTVLNPQQLAEVTEEEE---SHHHHHHHHHbbblxabaaaaaaaaa
1g8m_A_4411g8m   A445460IGAGQQSRIHCTRLAGEE-S-S-HHHHHHHHHbbbvxabaaaaaaaaa
1gox_*_2271gox   -228243LVKGVITAEDARLAVQEEE---SHHHHHHHHHbxbgxabaaaaaaaaa
1ipa_A_1171ipa   A120135VAVGLEKPGNLGAVLREEES---HHHHHHHHHbbbvxaxaaaaaaaaa
1izc_A_1201izc   A122137VIPHVETVEEVREFVKEETT---HHHHHHHHHbbxlxabaaaaaaaaa
1jqn_A_4691jqn   A473488VISMAKTPSDVLAVHLEEET--SHHHHHHHHHxbxlxabaaaaaaaaa
1k1e_A_761k1e   A7792FFLGKLEKETACFDLMEEES-S-HHHHHHHHHbbbvxabaaaaaaaaa
1kbl_A_7021kbl   A704719MIPLVGEKKELKFVKDEE-S--SHHHHHHHHHbxxlxabaaaaaaaaa
1mp9_A_681mp9   A7085VVTGAKSTDELIKAVKEEE--SSHHHHHHHHHbbbgxabaaaaaaaaa
1mum_A_1841mum   A186201FPEAITELAMYRQFADEETT---HHHHHHHHHbxxlxabaaaaaaaaa
1mxs_A_801mxs   A8297GAGTVLDRSMFAAVEAEEE---SHHHHHHHHHbbbvxabaaaaaaaaa
1pii_*_2581pii   -258273KVCGLTRGQDAKAAYDEE----SHHHHHHHHHbbxvxabaaaaaaaaa
1pkl_A_2071pkl   A209224FASFIRSAEQVGDVRKEETT--SHHHHHHHHHbxxlxabaaaaaaaaa
1pkx_A_4401pkx   A444459IGAGQQSRIHCTRLAGEE-S-SSHHHHHHHHHbbbvxabaaaaaaaaa
1qh5_A_241qh5   A2641AIVDPVQPQKVVDAAREEES-SSHHHHHHHHHbbxlxabaaaaaaaaa
1ujq_A_1841ujq   A186201FPEAITELSMYRRFADEE-S---HHHHHHHHHbxxvxabaaaaaaaaa
1v2x_A_231v2x   A2641LLENVHKPHNLSAILREEES---HHHHHHHHHbbblxaxaaaaaaaaa
1vhc_A_681vhc   A7085AAGTVLTAEQVVLAKSEEES--SHHHHHHHHHbxblxabaaaaaaaaa
PDB ligands within a cut-off distance of 6 Å in this subclass
LoopPDBChainLigandsResidue
1a49_A_2381a49   A     OXLOXALATE ION S - 242
1a49_A_2381a49   A     MGMAGNESIUM ION S - 242
1a49_A_2381a49   A     ATPADENOSINE-5'-TRIPHOSPHATE S - 242
1a49_A_2381a49   A     OXLOXALATE ION F - 243
1a49_A_2381a49   A     MGMAGNESIUM ION F - 243
1dxe_A_941dxe   A     PO4PHOSPHATE ION L - 96
1dxe_A_941dxe   A     MGMAGNESIUM ION P - 98
1dxe_A_941dxe   A     MGMAGNESIUM ION F - 99
1fq0_A_681fq0   A     CITCITRIC ACID G - 72
1fq0_A_681fq0   A     CITCITRIC ACID T - 73
1fq0_A_681fq0   A     CITCITRIC ACID V - 74
1g8m_A_4411g8m   A     MSESELENOMETHIONINE Q - 450
1g8m_A_4411g8m   A     MSESELENOMETHIONINE S - 451
1g8m_A_4411g8m   A     GGUANOSINE-5'-MONOPHOSPHATE S - 451
1g8m_A_4411g8m   A     MSESELENOMETHIONINE I - 453
1g8m_A_4411g8m   A     MSESELENOMETHIONINE H - 454
1g8m_A_4411g8m   A     GGUANOSINE-5'-MONOPHOSPHATE H - 454
1g8m_A_4411g8m   A     MSESELENOMETHIONINE R - 457
1gox_*_2271gox   *     FMNFLAVIN MONONUCLEOTIDE K - 230
1izc_A_1201izc   A     MGMAGNESIUM ION P - 124
1izc_A_1201izc   A     MGMAGNESIUM ION H - 125
1izc_A_1201izc   A     PYRPYRUVIC ACID H - 125
1jqn_A_4691jqn   A     MNMANGANESE (II) ION S - 475
1jqn_A_4691jqn   A     DCO3,3-DICHLORO-2-PHOSPHONOMETHYL-ACRYLIC ACID S - 475
1jqn_A_4691jqn   A     MNMANGANESE (II) ION M - 476
1k1e_A_761k1e   A     GOLGLYCEROL F - 78
1k1e_A_761k1e   A     COCOBALT (II) ION K - 84
1k1e_A_761k1e   A     HGMERCURY (II) ION K - 84
1k1e_A_761k1e   A     HGMERCURY (II) ION C - 88
1k1e_A_761k1e   A     HGMERCURY (II) ION F - 89
1k1e_A_761k1e   A     GOLGLYCEROL F - 89
1k1e_A_761k1e   A     GOLGLYCEROL D - 90
1k1e_A_761k1e   A     GOLGLYCEROL L - 91
1k1e_A_761k1e   A     HGMERCURY (II) ION M - 92
1k1e_A_761k1e   A     GOLGLYCEROL M - 92
1k1e_A_761k1e   A     GOLGLYCEROL K - 93
1k1e_A_761k1e   A     GOLGLYCEROL Q - 94
1v2x_A_231v2x   A     PO4PHOSPHATE ION N - 29
1v2x_A_231v2x   A     PO4PHOSPHATE ION V - 30
1v2x_A_231v2x   A     SAMS-ADENOSYLMETHIONINE V - 30
1v2x_A_231v2x   A     PO4PHOSPHATE ION H - 31
1v2x_A_231v2x   A     PO4PHOSPHATE ION K - 32
1v2x_A_231v2x   A     PO4PHOSPHATE ION H - 34
1v2x_A_231v2x   A     PO4PHOSPHATE ION N - 35

Clusters included in this Subclass
CLUSTER: EH.4.19
CLUSTER: EH.6.23