ArchDB - Biological DataBase of Protein Loops

Information on SUBCLASS 4.30.1

Subclass Accession number: 324
Subclass: 4.30.1

Type: HE alpha-beta
DB: ArchDB40

Image coordinates:

Consensus coordinates:

Conserved Annotation
EC : 1 (>50 %)
GO : GO:0004601 (>50 %)  GO:0016684 (>50 %)
SCOP : 53473 (>50 %)  53474 (>50 %)  53531 (>50 %)  89622 (>75 %)  89623 (>75 %)  89624 (>75 %)

Number of loops: 6

Average sequence ID (%) : 13.8 +/- 15.0
Average RMSD (Å) : 0.967 +/- 0.216

Consensus geometry

d (Å): 7

delta (°): 45-90

theta (°): 135-180

rho (°): 135-180

Consensus Sequence:	XhXXGhph
(φψ)-conformation:	aappgpbb

Pattern:	[aflmv]	[aikl]	[dgv]	x	[FLVY]	x	[AGL]	x	x	[GN]	[ILTV]	[ekqrs]	[afmpv]	[gklv]
Conservation:	-0.397	-0.379	-0.561	-0.739	0.639	-0.611	0.327	0.064	-0.490	2.888	1.021	-0.147	-0.785	-0.828

Loops included in this Subclass

Loop	PDB	Chain	Start	End	Sequence	Sec Struct	Ramachandran
1clc_*_140	1clc	-	147	160	MLGMYLLRCGTSVS	HHHHHHTB-SS-EE	aaaaaaaxbvbxbb
1ei6_A_303	1ei6	A	306	319	AIDFLAGIAGVEAV	HHHHHHTSTTEEEE	aaaaaaaxpgxabb
1itz_A_491	1itz	A	491	504	HLVSFRAMPNILML	HHHHHHSSSS-EEE	aaaaaaaxxlbxbx
1q5v_A_105	1q5v	A	111	124	FADDVIAQRGVRHG	HHHHHHHSSS-EEE	aaaaaaapxgpblx
1qhl_A_150	1qhl	A	153	166	LKDKLEAMEGVQFK	HHHHHHTSTT-EEE	aaaaaaaxxvxbbb
1v4v_A_23	1v4v	A	24	37	VYLALRGIPGLKPL	HHHHHHTSTT-EEE	aaaaaaabpvbbxb

PDB ligands within a cut-off distance of 6 Å in this subclass

Loop	PDB	Chain	Ligands	Residue
1clc_*_140	1clc	*	ZNZINC ION	R - 154
1clc_*_140	1clc	*	ZNZINC ION	C - 155
1clc_*_140	1clc	*	ZNZINC ION	G - 156
1clc_*_140	1clc	*	ZNZINC ION	T - 157
1v4v_A_23	1v4v	A	MSESELENOMETHIONINE	P - 23
1v4v_A_23	1v4v	A	MSESELENOMETHIONINE	V - 24
1v4v_A_23	1v4v	A	MSESELENOMETHIONINE	Y - 25
1v4v_A_23	1v4v	A	MSESELENOMETHIONINE	L - 26
1v4v_A_23	1v4v	A	MSESELENOMETHIONINE	A - 27
1v4v_A_23	1v4v	A	MSESELENOMETHIONINE	P - 32
1v4v_A_23	1v4v	A	MSESELENOMETHIONINE	G - 33
1v4v_A_23	1v4v	A	MSESELENOMETHIONINE	L - 34
1v4v_A_23	1v4v	A	MSESELENOMETHIONINE	K - 35
1v4v_A_23	1v4v	A	MSESELENOMETHIONINE	L - 37
1v4v_A_23	1v4v	A	MSESELENOMETHIONINE	V - 38
1v4v_A_23	1v4v	A	MSESELENOMETHIONINE	L - 39

Clusters included in this Subclass

CLUSTER: HE.5.55