Information on SUBCLASS 5.28.1 |
Subclass Accession number: 3263
Subclass: 5.28.1 Type: EH beta-alpha DB: ArchDB95 Image coordinates: Consensus coordinates: |
Number of loops: 5 Average sequence ID (%) : 45.7 +/- 27.2 Average RMSD (Å) : 0.300 +/- 0.122 Consensus geometry
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Consensus Sequence: | XXXXXpphh |
(φψ)-conformation: | bbppaabaa |
Pattern: | [ATV] | [V] | [IV] | [FMV] | [K] | [PV] | [AS] | [ep] | [mq] | [DT] | [P] | [LV] | [PT] | [AG] | [ALV] | [HIMY] | [ALMV] | [AGV] | [EKNS] | [AIL] | [FIL] | [hk] | [DE] |
Conservation: | -0.567 | 1.067 | 0.804 | -0.461 | 1.721 | 0.409 | 0.101 | -1.352 | -0.606 | 0.052 | 3.028 | 0.204 | 0.125 | 0.056 | -0.656 | -0.878 | -0.668 | -0.751 | -0.575 | -0.614 | -0.225 | -1.137 | 0.923 |
Loops included in this Subclass |
Loop | PDB | Chain | Start | End | Sequence | Sec Struct | Ramachandran |
1a4s_A_185 | 1a4s | A | 185 | 207 | AVVFKPSPMTPVTGVILAEIFHE | EEEEE--TTS-HHHHHHHHHHHH | bbbbbxpaabaaaaaaaaaaaaa |
1bxs_A_188 | 1bxs | A | 188 | 210 | TVVVKPAEQTPLTALHMGSLIKE | EEEEE--TT--HHHHHHHHHHHH | bbbxbxpaabaaaaaaaaaaaaa |
1ky8_A_187 | 1ky8 | A | 187 | 209 | AVVVKPSISDPLPAAMAVKALLD | EEEEE--TTS-HHHHHHHHHHHH | xbbxbxxaabaaaaaaaaaaaaa |
1o04_A_188 | 1o04 | A | 188 | 210 | VVVMKVAEQTPLTALYVANLIKE | EEEEE--TTS-HHHHHHHHHHHH | bbbbbxxaabaaaaaaaaaaaaa |
1o9j_A_188 | 1o9j | A | 188 | 210 | TVIVKPAEQTPLTALHVASLIKE | EEEEE--SS--HHHHHHHHHHHH | bbbxbwxaabaaaaaaaaaaaaa |
PDB ligands within a cut-off distance of 6 Å in this subclass |
Loop | PDB | Chain | Ligands | Residue |
1bxs_A_188 | 1bxs | A | NADNICOTINAMIDE-ADENINE-DINUCLEOTIDE | K - 192 |
1bxs_A_188 | 1bxs | A | NADNICOTINAMIDE-ADENINE-DINUCLEOTIDE | P - 193 |
1bxs_A_188 | 1bxs | A | NADNICOTINAMIDE-ADENINE-DINUCLEOTIDE | A - 194 |
1bxs_A_188 | 1bxs | A | NADNICOTINAMIDE-ADENINE-DINUCLEOTIDE | E - 195 |
1bxs_A_188 | 1bxs | A | NADNICOTINAMIDE-ADENINE-DINUCLEOTIDE | Q - 196 |
1ky8_A_187 | 1ky8 | A | NAPNADP NICOTINAMIDE-ADENINE-DINUCLEOTIDE PHOSPHATE | K - 191 |
1ky8_A_187 | 1ky8 | A | NAPNADP NICOTINAMIDE-ADENINE-DINUCLEOTIDE PHOSPHATE | P - 192 |
1ky8_A_187 | 1ky8 | A | NAPNADP NICOTINAMIDE-ADENINE-DINUCLEOTIDE PHOSPHATE | S - 193 |
1ky8_A_187 | 1ky8 | A | NAPNADP NICOTINAMIDE-ADENINE-DINUCLEOTIDE PHOSPHATE | I - 194 |
1ky8_A_187 | 1ky8 | A | NAPNADP NICOTINAMIDE-ADENINE-DINUCLEOTIDE PHOSPHATE | S - 195 |
1o04_A_188 | 1o04 | A | NADNICOTINAMIDE-ADENINE-DINUCLEOTIDE | V - 193 |
1o04_A_188 | 1o04 | A | MGMAGNESIUM ION | E - 195 |
1o04_A_188 | 1o04 | A | MGMAGNESIUM ION | Q - 196 |
1o04_A_188 | 1o04 | A | EDO1,2-ETHANEDIOL | Y - 203 |
PDB Site Annotated loops in this subclass |
Loop | PDB | Chain | Site | Residue |
1o9j_A_188 | 1o9j | A | NDANAD BINDING SITE FOR CHAIN A | K - 192 |
1o9j_A_188 | 1o9j | A | NDANAD BINDING SITE FOR CHAIN A | A - 194 |
1o9j_A_188 | 1o9j | A | NDANAD BINDING SITE FOR CHAIN A | E - 195 |
Clusters included in this Subclass |
CLUSTER: EH.6.27 |