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Information on SUBCLASS 5.28.1
Subclass Accession number: 3263
Subclass: 5.28.1 PSSM
Type: EH beta-alpha
DB: ArchDB95

Image coordinates: Rasmol PDB Jmol PDB
Consensus coordinates: Rasmol PDB Jmol PDB
Number of loops: 5

Average sequence ID (%) : 45.7 +/- 27.2
Average RMSD (Å) : 0.300 +/- 0.122

Consensus geometry
d (Å): 11 delta (°): 45-90 theta (°): 135-180 rho (°): 90-135
Consensus Sequence: XXXXXpphh
(φψ)-conformation: bbppaabaa
Pattern: [ATV][V][IV][FMV][K][PV][AS][ep][mq][DT][P][LV][PT][AG][ALV][HIMY][ALMV][AGV][EKNS][AIL][FIL][hk][DE]
Conservation:-0.5671.0670.804-0.4611.7210.4090.101-1.352-0.6060.0523.0280.2040.1250.056-0.656-0.878-0.668-0.751-0.575-0.614-0.225-1.1370.923
Loops included in this Subclass
LoopPDBChainStartEndSequenceSec StructRamachandran
1a4s_A_1851a4s   A185207AVVFKPSPMTPVTGVILAEIFHEEEEEE--TTS-HHHHHHHHHHHHbbbbbxpaabaaaaaaaaaaaaa
1bxs_A_1881bxs   A188210TVVVKPAEQTPLTALHMGSLIKEEEEEE--TT--HHHHHHHHHHHHbbbxbxpaabaaaaaaaaaaaaa
1ky8_A_1871ky8   A187209AVVVKPSISDPLPAAMAVKALLDEEEEE--TTS-HHHHHHHHHHHHxbbxbxxaabaaaaaaaaaaaaa
1o04_A_1881o04   A188210VVVMKVAEQTPLTALYVANLIKEEEEEE--TTS-HHHHHHHHHHHHbbbbbxxaabaaaaaaaaaaaaa
1o9j_A_1881o9j   A188210TVIVKPAEQTPLTALHVASLIKEEEEEE--SS--HHHHHHHHHHHHbbbxbwxaabaaaaaaaaaaaaa
PDB ligands within a cut-off distance of 6 Å in this subclass
LoopPDBChainLigandsResidue
1bxs_A_1881bxs   A     NADNICOTINAMIDE-ADENINE-DINUCLEOTIDE K - 192
1bxs_A_1881bxs   A     NADNICOTINAMIDE-ADENINE-DINUCLEOTIDE P - 193
1bxs_A_1881bxs   A     NADNICOTINAMIDE-ADENINE-DINUCLEOTIDE A - 194
1bxs_A_1881bxs   A     NADNICOTINAMIDE-ADENINE-DINUCLEOTIDE E - 195
1bxs_A_1881bxs   A     NADNICOTINAMIDE-ADENINE-DINUCLEOTIDE Q - 196
1ky8_A_1871ky8   A     NAPNADP NICOTINAMIDE-ADENINE-DINUCLEOTIDE PHOSPHATE K - 191
1ky8_A_1871ky8   A     NAPNADP NICOTINAMIDE-ADENINE-DINUCLEOTIDE PHOSPHATE P - 192
1ky8_A_1871ky8   A     NAPNADP NICOTINAMIDE-ADENINE-DINUCLEOTIDE PHOSPHATE S - 193
1ky8_A_1871ky8   A     NAPNADP NICOTINAMIDE-ADENINE-DINUCLEOTIDE PHOSPHATE I - 194
1ky8_A_1871ky8   A     NAPNADP NICOTINAMIDE-ADENINE-DINUCLEOTIDE PHOSPHATE S - 195
1o04_A_1881o04   A     NADNICOTINAMIDE-ADENINE-DINUCLEOTIDE V - 193
1o04_A_1881o04   A     MGMAGNESIUM ION E - 195
1o04_A_1881o04   A     MGMAGNESIUM ION Q - 196
1o04_A_1881o04   A     EDO1,2-ETHANEDIOL Y - 203
PDB Site Annotated loops in this subclass
LoopPDBChainSiteResidue
1o9j_A_1881o9j   A NDANAD BINDING SITE FOR CHAIN AK - 192
1o9j_A_1881o9j   A NDANAD BINDING SITE FOR CHAIN AA - 194
1o9j_A_1881o9j   A NDANAD BINDING SITE FOR CHAIN AE - 195

Clusters included in this Subclass
CLUSTER: EH.6.27