ArchDB - Biological DataBase of Protein Loops

Grup de Recerca en Informàtica Biomèdica

Information on SUBCLASS 5.44.1

Subclass Accession number: 3281
Subclass: 5.44.1

PSSM

Type: EH beta-alpha
DB: ArchDB95

Image coordinates:

Rasmol PDB

Jmol PDB

Consensus coordinates:

Rasmol PDB

Jmol PDB

Number of loops: 5

Average sequence ID (%) : 21.7 +/- 19.4
Average RMSD (Å) : 0.440 +/- 0.195

Consensus geometry

d (Å): 13

delta (°): 45-90

theta (°): 135-180

rho (°): 315-360

Consensus Sequence:	hXGGhpphp
(φψ)-conformation:	bbSlpabaa

Pattern:	[FIV]	x	[AGIV]	[dgs]	[GS]	[G]	[FIV]	[hr]	[DNRS]	[AFGL]	[deqs]	[DTY]	[AIV]	x	[EKL]	[ALM]	x	[AGKLM]
Conservation:	0.582	-0.877	-0.508	-0.584	1.548	3.048	0.645	0.144	-0.112	-0.868	-0.640	-0.060	0.195	-0.784	-0.115	-0.020	-0.640	-0.956

Loops included in this Subclass

Loop	PDB	Chain	Start	End	Sequence	Sec Struct	Ramachandran
1ep3_A_244	1ep3	A	244	261	IIGMGGVANAQDVLEMYM	EEE-SS--SHHHHHHHHH	bbxbSvxabaaaaaaaaa
1n7k_A_195	1n7k	A	196	213	VKASGGIRSGIDAVLAVG	EEEESS--SHHHHHHHHH	bbbbSvxabaaaaaaaaa
1p4c_A_281	1p4c	A	281	298	VLIDSGFRRGSDIVKALA	EEE-SS--SHHHHHHHHH	bxbbvvxabaaaaaaaaa
1qo2_A_76	1qo2	A	76	93	IQIGGGIRSLDYAEKLRK	EEEESS--SHHHHHHHHH	bbbbSvxabaaaaaaaaa
1thf_D_77	1thf	D	77	94	FTVGGGIHDFETASELIL	EEEESS--SHHHHHHHHH	bbbbSvxabaaaaaaaaa

PDB ligands within a cut-off distance of 6 Å in this subclass

Loop	PDB	Chain	Ligands	Residue
1ep3_A_244	1ep3	A	FMNFLAVIN MONONUCLEOTIDE	M - 247
1ep3_A_244	1ep3	A	FMNFLAVIN MONONUCLEOTIDE	G - 248
1ep3_A_244	1ep3	A	FMNFLAVIN MONONUCLEOTIDE	G - 249
1ep3_A_244	1ep3	A	FMNFLAVIN MONONUCLEOTIDE	V - 250
1p4c_A_281	1p4c	A	FMNFLAVIN MONONUCLEOTIDE	D - 284
1p4c_A_281	1p4c	A	FMNFLAVIN MONONUCLEOTIDE	S - 285
1p4c_A_281	1p4c	A	FMNFLAVIN MONONUCLEOTIDE	G - 286
1p4c_A_281	1p4c	A	FMNFLAVIN MONONUCLEOTIDE	F - 287
1p4c_A_281	1p4c	A	FMNFLAVIN MONONUCLEOTIDE	R - 288
1thf_D_77	1thf	D	PO4PHOSPHATE ION	G - 80
1thf_D_77	1thf	D	PO4PHOSPHATE ION	G - 81
1thf_D_77	1thf	D	PO4PHOSPHATE ION	G - 82
1thf_D_77	1thf	D	PO4PHOSPHATE ION	I - 83
1thf_D_77	1thf	D	PO4PHOSPHATE ION	H - 84

Clusters included in this Subclass

CLUSTER: EH.5.157