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Information on SUBCLASS 6.3.2
Subclass Accession number: 3326
Subclass: 6.3.2 PSSM
Type: EH beta-alpha
DB: ArchDB95

Image coordinates: Rasmol PDB Jmol PDB
Consensus coordinates: Rasmol PDB Jmol PDB
Number of loops: 5

Average sequence ID (%) : 33.1 +/- 23.3
Average RMSD (Å) : 0.400 +/- 0.122

Consensus geometry
d (Å): 11 delta (°): 90-135 theta (°): 90-135 rho (°): 135-180
Consensus Sequence: hGDGAXpEhp
(φψ)-conformation: bbaaaaapaa
Pattern: [ACV]x[ACT][FLTWY][FILY][G][DE][G][AE][AMT][ADNS][EQ][GPS][DEQ][afiw][FHKY]
Conservation:-0.485-1.017-0.256-0.750-0.2872.0231.1602.023-0.156-0.629-0.6260.801-0.4060.276-1.283-0.387
Loops included in this Subclass
LoopPDBChainStartEndSequenceSec StructRamachandran
1l8a_A_2241l8a   A224239VYAFLGDGEMDEPESKEEEEEETGGGGSHHHHbbbxbbaaaaaxaaaa
1ni4_A_1611ni4   A161176CLTLYGDGAANQGQIFEEEEEETTGGG-HHHHbxbxbxaaaaaxaaaa
1ols_A_1871ols   A187202VICYFGEGAASEGDAHEEEEEETTGGGSHHHHbbbxbxaaaaaxaaaa
1qs0_A_2071qs0   A207222ASAWIGDGATAESDFHEEEEEETGGGGSHHHHbbxbbxaaaaaxaaaa
1umd_A_1691umd   A169184AVCTFGDGATSEGDWYEEEEEETGGGGSHHHHbbbbbxaaaaaxaaaa
PDB ligands within a cut-off distance of 6 Å in this subclass
LoopPDBChainLigandsResidue
1l8a_A_2241l8a   A     TDPTHIAMIN DIPHOSPHATE L - 228
1l8a_A_2241l8a   A     TDPTHIAMIN DIPHOSPHATE G - 229
1l8a_A_2241l8a   A     MGMAGNESIUM ION G - 229
1l8a_A_2241l8a   A     TDPTHIAMIN DIPHOSPHATE D - 230
1l8a_A_2241l8a   A     MGMAGNESIUM ION D - 230
1l8a_A_2241l8a   A     TDPTHIAMIN DIPHOSPHATE G - 231
1l8a_A_2241l8a   A     MGMAGNESIUM ION G - 231
1l8a_A_2241l8a   A     TDPTHIAMIN DIPHOSPHATE E - 232
1l8a_A_2241l8a   A     TDPTHIAMIN DIPHOSPHATE M - 233
1l8a_A_2241l8a   A     TDPTHIAMIN DIPHOSPHATE E - 235
1ni4_A_1611ni4   A     MSESELENOMETHIONINE Y - 165
1ni4_A_1611ni4   A     TPPTHIAMINE DIPHOSPHATE Y - 165
1ni4_A_1611ni4   A     MGMAGNESIUM ION G - 166
1ni4_A_1611ni4   A     TPPTHIAMINE DIPHOSPHATE G - 166
1ni4_A_1611ni4   A     MSESELENOMETHIONINE D - 167
1ni4_A_1611ni4   A     MGMAGNESIUM ION D - 167
1ni4_A_1611ni4   A     TPPTHIAMINE DIPHOSPHATE D - 167
1ni4_A_1611ni4   A     MGMAGNESIUM ION G - 168
1ni4_A_1611ni4   A     TPPTHIAMINE DIPHOSPHATE G - 168
1ni4_A_1611ni4   A     TPPTHIAMINE DIPHOSPHATE A - 169
1ni4_A_1611ni4   A     TPPTHIAMINE DIPHOSPHATE A - 170
1ni4_A_1611ni4   A     MSESELENOMETHIONINE Q - 172
1ni4_A_1611ni4   A     TPPTHIAMINE DIPHOSPHATE Q - 172
1ni4_A_1611ni4   A     MSESELENOMETHIONINE Q - 174
1ni4_A_1611ni4   A     TPPTHIAMINE DIPHOSPHATE Q - 174
1ni4_A_1611ni4   A     MSESELENOMETHIONINE F - 176
1ni4_A_1611ni4   A     MSESELENOMETHIONINE E - 177
1ni4_A_1611ni4   A     MSESELENOMETHIONINE A - 178
1ni4_A_1611ni4   A     MSESELENOMETHIONINE Y - 179
1ols_A_1871ols   A     TDPTHIAMIN DIPHOSPHATE F - 191
1ols_A_1871ols   A     MNMANGANESE (II) ION G - 192
1ols_A_1871ols   A     TDPTHIAMIN DIPHOSPHATE G - 192
1ols_A_1871ols   A     MNMANGANESE (II) ION E - 193
1ols_A_1871ols   A     TDPTHIAMIN DIPHOSPHATE E - 193
1ols_A_1871ols   A     MNMANGANESE (II) ION G - 194
1ols_A_1871ols   A     TDPTHIAMIN DIPHOSPHATE G - 194
1ols_A_1871ols   A     TDPTHIAMIN DIPHOSPHATE A - 195
1ols_A_1871ols   A     TDPTHIAMIN DIPHOSPHATE A - 196
1ols_A_1871ols   A     TDPTHIAMIN DIPHOSPHATE E - 198
1qs0_A_2071qs0   A     MSESELENOMETHIONINE A - 207
1qs0_A_2071qs0   A     MSESELENOMETHIONINE S - 208
1qs0_A_2071qs0   A     MSESELENOMETHIONINE A - 209
1qs0_A_2071qs0   A     TDPTHIAMIN DIPHOSPHATE I - 211
1qs0_A_2071qs0   A     MGMAGNESIUM ION G - 212
1qs0_A_2071qs0   A     TDPTHIAMIN DIPHOSPHATE G - 212
1qs0_A_2071qs0   A     MGMAGNESIUM ION D - 213
1qs0_A_2071qs0   A     TDPTHIAMIN DIPHOSPHATE D - 213
1qs0_A_2071qs0   A     MGMAGNESIUM ION G - 214
1qs0_A_2071qs0   A     TDPTHIAMIN DIPHOSPHATE G - 214
1qs0_A_2071qs0   A     TDPTHIAMIN DIPHOSPHATE A - 215
1qs0_A_2071qs0   A     TDPTHIAMIN DIPHOSPHATE T - 216
1qs0_A_2071qs0   A     TDPTHIAMIN DIPHOSPHATE E - 218
1qs0_A_2071qs0   A     MSESELENOMETHIONINE F - 227
1qs0_A_2071qs0   A     MSESELENOMETHIONINE Y - 231
1umd_A_1691umd   A     TDPTHIAMIN DIPHOSPHATE F - 173
1umd_A_1691umd   A     MGMAGNESIUM ION G - 174
1umd_A_1691umd   A     TDPTHIAMIN DIPHOSPHATE G - 174
1umd_A_1691umd   A     MGMAGNESIUM ION D - 175
1umd_A_1691umd   A     TDPTHIAMIN DIPHOSPHATE D - 175
1umd_A_1691umd   A     MGMAGNESIUM ION G - 176
1umd_A_1691umd   A     TDPTHIAMIN DIPHOSPHATE G - 176
1umd_A_1691umd   A     TDPTHIAMIN DIPHOSPHATE A - 177
1umd_A_1691umd   A     TDPTHIAMIN DIPHOSPHATE T - 178
1umd_A_1691umd   A     TDPTHIAMIN DIPHOSPHATE E - 180
PDB Site Annotated loops in this subclass
LoopPDBChainSiteResidue
1ols_A_1871ols   A TDPTDP BINDING SITE FOR CHAIN AG - 192
1ols_A_1871ols   A MN1MN BINDING SITE FOR CHAIN AE - 193
1ols_A_1871ols   A TDPTDP BINDING SITE FOR CHAIN AG - 194
1ols_A_1871ols   A TDPTDP BINDING SITE FOR CHAIN AE - 198

Clusters included in this Subclass
CLUSTER: EH.5.144