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Information on SUBCLASS 6.5.1
Subclass Accession number: 3333
Subclass: 6.5.1 PSSM
Type: EH beta-alpha
DB: ArchDB95

Image coordinates: Rasmol PDB Jmol PDB
Consensus coordinates: Rasmol PDB Jmol PDB
Number of loops: 20

Average sequence ID (%) : 29.4 +/- 24.2
Average RMSD (Å) : 0.460 +/- 0.167

Consensus geometry
d (Å): 9 delta (°): 45-90 theta (°): 135-180 rho (°): 90-135
Consensus Sequence: XSAXpXXchp
(φψ)-conformation: bbaaalplaa
Pattern: [fhilmv][egps][acst][CS][AV][KLTV][adknst][ADGKNQRS]x[DGN][ILVY][deknqry][deknpqt][AGILTV][FILMV]xx[AILMTV][acgilmtv]
Conservation:-0.532-0.2330.3801.7791.800-0.306-0.330-0.448-0.9341.4500.883-0.959-0.440-0.7091.341-1.065-1.2100.413-0.880
Loops included in this Subclass
LoopPDBChainStartEndSequenceSec StructRamachandran
1c1y_A_1421c1y   A144162LESSAKSKINVNEIFYDLVEE-BTTTTBSHHHHHHHHHbbbbaaalblaaaaaaaaa
1ctq_A_1411ctq   A142160IETSAKTRQGVEDAFYTLVEE--TTT-TTHHHHHHHHHbxbbaaavpvaaaaaaaaa
1d5c_A_1511d5c   A151169HETSAKAGHNIKVLFKKTAEE-BTTTTBS-HHHHHHHHbbbbaaavblaaaaaaaaa
1e0s_A_1491e0s   A152170QPSCATSGDGLYEGLTWLTEE-BTTTTBTHHHHHHHHHbwbbaaavxvaaaaaaaaa
1ek0_A_1481ek0   A150168FETSAKTGENVNDVFLGIGEE--TTT-TTHHHHHHHHHbbbbaaavpvaaaaaaaaa
1f6b_A_1731f6b   A176194FMCSVLKRQGYGEGFRWMAEE-BTTTTBSHHHHHHHHHbxbbaaalbgaaaaaaaaa
1fzq_A_1531fzq   A156174QSCSALTGEGVQDGMNWVCEE--TTT-TTHHHHHHHHHbxbbaaavpvaaaaaaaaa
1g16_A_1581g16   A159177IESSAKNDDNVNEIFFTLAEE-BTTTTBSHHHHHHHHHbbbbaaalbvaaaaaaaaa
1huq_A_1591huq   A161179METSAKTAMNVNEIFMAIAEE--TTT-TTHHHHHHHHHbxbbaaavpUaaaaaaaaa
1kk1_A_1761kk1   A177195IPISALHGANIDVLVKAIEEE-BTTTTBSHHHHHHHHHbxbbaaavxvaaaaaaaaa
1kmq_A_1551kmq   A157175MECSAKTKDGVREVFEMATEE--TTT-TTHHHHHHHHHbbbbaaavpvaaaaaaaaa
1ksh_A_1521ksh   A155173QGCSAVTGEDLLPGIDWLLEE--TTT-TTHHHHHHHHHbxbbaaavxvaaaaaaaaa
1m2o_B_1661m2o   B169187FMCSVVMRNGYLEAFQWLSEE-BTTTTBSHHHHHHHHHbxbbaaalbvaaaaaaaaa
1mr3_F_1531mr3   F156174QSTCATSGEGLYEGLEWLSEE-BTTTTBTHHHHHHHHHbxbbaaavxvaaaaaaaaa
1oiv_A_1491oiv   A151169IETSALDSTNVEAAFQTILEE--TTT-TTHHHHHHHHHbbbbaaavpUaaaaaaaaa
1r2q_A_1581r2q   A160178METSAKTSMNVNEIFMAIAEE--TTT-TTHHHHHHHHHbxbbaaavpvaaaaaaaaa
1ryh_A_1721ryh   A174192LECSALTQRGLKTVFDEAIEE--TTT-TTHHHHHHHHHbbbbaaavxvaaaaaaaaa
1uad_A_1521uad   A154172VETSAKTRANVDKVFFDLMEE--TTT-TTHHHHHHHHHbbbbaaavpUaaaaaaaaa
2ngr_A_1542ngr   A155173VECSALTQKGLKNVFDEAIEE--TTT-TTHHHHHHHHHbbbbaaavxvaaaaaaaaa
3rab_A_1603rab   A162180FEASAKDNINVKQTFERLVEE-BTTTTBSHHHHHHHHHbbbbaaalbvaaaaaaaaa
PDB ligands within a cut-off distance of 6 Å in this subclass
LoopPDBChainLigandsResidue
1c1y_A_1421c1y   A     GTPGUANOSINE-5'-TRIPHOSPHATE S - 146
1c1y_A_1421c1y   A     GTPGUANOSINE-5'-TRIPHOSPHATE S - 147
1c1y_A_1421c1y   A     GTPGUANOSINE-5'-TRIPHOSPHATE A - 148
1c1y_A_1421c1y   A     GTPGUANOSINE-5'-TRIPHOSPHATE K - 149
1c1y_A_1421c1y   A     GTPGUANOSINE-5'-TRIPHOSPHATE S - 150
1ctq_A_1411ctq   A     GNPPHOSPHOAMINOPHOSPHONIC ACID-GUANYLATE ESTER T - 144
1ctq_A_1411ctq   A     GNPPHOSPHOAMINOPHOSPHONIC ACID-GUANYLATE ESTER S - 145
1ctq_A_1411ctq   A     GNPPHOSPHOAMINOPHOSPHONIC ACID-GUANYLATE ESTER A - 146
1ctq_A_1411ctq   A     GNPPHOSPHOAMINOPHOSPHONIC ACID-GUANYLATE ESTER K - 147
1ctq_A_1411ctq   A     GNPPHOSPHOAMINOPHOSPHONIC ACID-GUANYLATE ESTER T - 148
1d5c_A_1511d5c   A     MSESELENOMETHIONINE H - 151
1d5c_A_1511d5c   A     GDPGUANOSINE-5'-DIPHOSPHATE T - 153
1d5c_A_1511d5c   A     GDPGUANOSINE-5'-DIPHOSPHATE S - 154
1d5c_A_1511d5c   A     GDPGUANOSINE-5'-DIPHOSPHATE A - 155
1d5c_A_1511d5c   A     GDPGUANOSINE-5'-DIPHOSPHATE K - 156
1d5c_A_1511d5c   A     GDPGUANOSINE-5'-DIPHOSPHATE A - 157
1d5c_A_1511d5c   A     MSESELENOMETHIONINE V - 163
1d5c_A_1511d5c   A     MSESELENOMETHIONINE L - 164
1d5c_A_1511d5c   A     MSESELENOMETHIONINE K - 167
1d5c_A_1511d5c   A     MSESELENOMETHIONINE T - 168
1e0s_A_1491e0s   A     DTT2,3-DIHYDROXY-1,4-DITHIOBUTANE P - 153
1e0s_A_1491e0s   A     DTT2,3-DIHYDROXY-1,4-DITHIOBUTANE S - 154
1e0s_A_1491e0s   A     GDPGUANOSINE-5'-DIPHOSPHATE C - 155
1e0s_A_1491e0s   A     DTT2,3-DIHYDROXY-1,4-DITHIOBUTANE C - 155
1e0s_A_1491e0s   A     GDPGUANOSINE-5'-DIPHOSPHATE A - 156
1e0s_A_1491e0s   A     GDPGUANOSINE-5'-DIPHOSPHATE T - 157
1e0s_A_1491e0s   A     GDPGUANOSINE-5'-DIPHOSPHATE S - 158
1e0s_A_1491e0s   A     DTT2,3-DIHYDROXY-1,4-DITHIOBUTANE S - 158
1e0s_A_1491e0s   A     DTT2,3-DIHYDROXY-1,4-DITHIOBUTANE D - 160
1ek0_A_1481ek0   A     GNPPHOSPHOAMINOPHOSPHONIC ACID-GUANYLATE ESTER T - 152
1ek0_A_1481ek0   A     MHOS-OXYMETHIONINE S - 153
1ek0_A_1481ek0   A     GNPPHOSPHOAMINOPHOSPHONIC ACID-GUANYLATE ESTER S - 153
1ek0_A_1481ek0   A     GNPPHOSPHOAMINOPHOSPHONIC ACID-GUANYLATE ESTER A - 154
1ek0_A_1481ek0   A     GNPPHOSPHOAMINOPHOSPHONIC ACID-GUANYLATE ESTER K - 155
1ek0_A_1481ek0   A     GNPPHOSPHOAMINOPHOSPHONIC ACID-GUANYLATE ESTER T - 156
1ek0_A_1481ek0   A     GDPGUANOSINE-5'-DIPHOSPHATE G - 168
1f6b_A_1731f6b   A     GDPGUANOSINE-5'-DIPHOSPHATE C - 178
1f6b_A_1731f6b   A     GDPGUANOSINE-5'-DIPHOSPHATE S - 179
1f6b_A_1731f6b   A     GDPGUANOSINE-5'-DIPHOSPHATE V - 180
1f6b_A_1731f6b   A     GDPGUANOSINE-5'-DIPHOSPHATE L - 181
1f6b_A_1731f6b   A     GDPGUANOSINE-5'-DIPHOSPHATE K - 182
1fzq_A_1531fzq   A     MES2-(N-MORPHOLINO)-ETHANESULFONIC ACID W - 153
1fzq_A_1531fzq   A     MES2-(N-MORPHOLINO)-ETHANESULFONIC ACID Q - 154
1fzq_A_1531fzq   A     MES2-(N-MORPHOLINO)-ETHANESULFONIC ACID I - 155
1fzq_A_1531fzq   A     GDPGUANOSINE-5'-DIPHOSPHATE C - 158
1fzq_A_1531fzq   A     GDPGUANOSINE-5'-DIPHOSPHATE S - 159
1fzq_A_1531fzq   A     GDPGUANOSINE-5'-DIPHOSPHATE A - 160
1fzq_A_1531fzq   A     GDPGUANOSINE-5'-DIPHOSPHATE L - 161
1fzq_A_1531fzq   A     GDPGUANOSINE-5'-DIPHOSPHATE T - 162
1fzq_A_1531fzq   A     MES2-(N-MORPHOLINO)-ETHANESULFONIC ACID W - 172
1g16_A_1581g16   A     GDPGUANOSINE-5'-DIPHOSPHATE S - 161
1g16_A_1581g16   A     GDPGUANOSINE-5'-DIPHOSPHATE S - 162
1g16_A_1581g16   A     GDPGUANOSINE-5'-DIPHOSPHATE A - 163
1g16_A_1581g16   A     MSESELENOMETHIONINE K - 164
1g16_A_1581g16   A     GDPGUANOSINE-5'-DIPHOSPHATE K - 164
1g16_A_1581g16   A     GDPGUANOSINE-5'-DIPHOSPHATE N - 165
1g16_A_1581g16   A     COCOBALT (II) ION D - 166
1g16_A_1581g16   A     COCOBALT (II) ION N - 170
1g16_A_1581g16   A     MSESELENOMETHIONINE L - 176
1g16_A_1581g16   A     MSESELENOMETHIONINE A - 177
1g16_A_1581g16   A     MSESELENOMETHIONINE K - 178
1g16_A_1581g16   A     MSESELENOMETHIONINE I - 180
1g16_A_1581g16   A     MSESELENOMETHIONINE Q - 181
1huq_A_1591huq   A     GNPPHOSPHOAMINOPHOSPHONIC ACID-GUANYLATE ESTER T - 163
1huq_A_1591huq   A     GNPPHOSPHOAMINOPHOSPHONIC ACID-GUANYLATE ESTER S - 164
1huq_A_1591huq   A     GNPPHOSPHOAMINOPHOSPHONIC ACID-GUANYLATE ESTER A - 165
1huq_A_1591huq   A     GNPPHOSPHOAMINOPHOSPHONIC ACID-GUANYLATE ESTER K - 166
1huq_A_1591huq   A     GNPPHOSPHOAMINOPHOSPHONIC ACID-GUANYLATE ESTER T - 167
1kk1_A_1761kk1   A     GNPPHOSPHOAMINOPHOSPHONIC ACID-GUANYLATE ESTER I - 179
1kk1_A_1761kk1   A     GNPPHOSPHOAMINOPHOSPHONIC ACID-GUANYLATE ESTER S - 180
1kk1_A_1761kk1   A     GNPPHOSPHOAMINOPHOSPHONIC ACID-GUANYLATE ESTER A - 181
1kk1_A_1761kk1   A     GNPPHOSPHOAMINOPHOSPHONIC ACID-GUANYLATE ESTER L - 182
1kk1_A_1761kk1   A     GNPPHOSPHOAMINOPHOSPHONIC ACID-GUANYLATE ESTER H - 183
1kmq_A_1551kmq   A     DOXDIOXANE G - 155
1kmq_A_1551kmq   A     DOXDIOXANE Y - 156
1kmq_A_1551kmq   A     GNPPHOSPHOAMINOPHOSPHONIC ACID-GUANYLATE ESTER C - 159
1kmq_A_1551kmq   A     GNPPHOSPHOAMINOPHOSPHONIC ACID-GUANYLATE ESTER S - 160
1kmq_A_1551kmq   A     GNPPHOSPHOAMINOPHOSPHONIC ACID-GUANYLATE ESTER A - 161
1kmq_A_1551kmq   A     GNPPHOSPHOAMINOPHOSPHONIC ACID-GUANYLATE ESTER K - 162
1ksh_A_1521ksh   A     CMES,S-(2-HYDROXYETHYL)THIOCYSTEINE I - 154
1ksh_A_1521ksh   A     CMES,S-(2-HYDROXYETHYL)THIOCYSTEINE Q - 155
1ksh_A_1521ksh   A     CMES,S-(2-HYDROXYETHYL)THIOCYSTEINE G - 156
1ksh_A_1521ksh   A     CMES,S-(2-HYDROXYETHYL)THIOCYSTEINE C - 157
1ksh_A_1521ksh   A     GDPGUANOSINE-5'-DIPHOSPHATE C - 157
1ksh_A_1521ksh   A     GDPGUANOSINE-5'-DIPHOSPHATE A - 159
1ksh_A_1521ksh   A     GDPGUANOSINE-5'-DIPHOSPHATE V - 160
1ksh_A_1521ksh   A     GDPGUANOSINE-5'-DIPHOSPHATE T - 161
1m2o_B_1661m2o   B     GNPPHOSPHOAMINOPHOSPHONIC ACID-GUANYLATE ESTER C - 171
1m2o_B_1661m2o   B     GNPPHOSPHOAMINOPHOSPHONIC ACID-GUANYLATE ESTER S - 172
1m2o_B_1661m2o   B     GNPPHOSPHOAMINOPHOSPHONIC ACID-GUANYLATE ESTER V - 173
1m2o_B_1661m2o   B     GNPPHOSPHOAMINOPHOSPHONIC ACID-GUANYLATE ESTER V - 174
1m2o_B_1661m2o   B     GNPPHOSPHOAMINOPHOSPHONIC ACID-GUANYLATE ESTER M - 175
1mr3_F_1531mr3   F     EGLETHYLENE GLYCOL W - 153
1mr3_F_1531mr3   F     EGLETHYLENE GLYCOL F - 154
1mr3_F_1531mr3   F     EOHETHANOL Q - 156
1mr3_F_1531mr3   F     EOHETHANOL S - 157
1mr3_F_1531mr3   F     G3DGUANOSINE-3'-MONOPHOSPHATE-5'-DIPHOSPHATE T - 158
1mr3_F_1531mr3   F     G3DGUANOSINE-3'-MONOPHOSPHATE-5'-DIPHOSPHATE C - 159
1mr3_F_1531mr3   F     G3DGUANOSINE-3'-MONOPHOSPHATE-5'-DIPHOSPHATE A - 160
1mr3_F_1531mr3   F     EGLETHYLENE GLYCOL A - 160
1mr3_F_1531mr3   F     G3DGUANOSINE-3'-MONOPHOSPHATE-5'-DIPHOSPHATE T - 161
1mr3_F_1531mr3   F     EGLETHYLENE GLYCOL T - 161
1mr3_F_1531mr3   F     G3DGUANOSINE-3'-MONOPHOSPHATE-5'-DIPHOSPHATE S - 162
1mr3_F_1531mr3   F     EGLETHYLENE GLYCOL S - 162
1mr3_F_1531mr3   F     EGLETHYLENE GLYCOL G - 163
1mr3_F_1531mr3   F     EGLETHYLENE GLYCOL E - 164
1mr3_F_1531mr3   F     EOHETHANOL E - 164
1mr3_F_1531mr3   F     EGLETHYLENE GLYCOL G - 165
1mr3_F_1531mr3   F     EOHETHANOL G - 165
1mr3_F_1531mr3   F     EGLETHYLENE GLYCOL L - 166
1mr3_F_1531mr3   F     EOHETHANOL E - 168
1mr3_F_1531mr3   F     EGLETHYLENE GLYCOL W - 172
1mr3_F_1531mr3   F     EGLETHYLENE GLYCOL N - 176
1oiv_A_1491oiv   A     GDPGUANOSINE-5'-DIPHOSPHATE L - 156
1oiv_A_1491oiv   A     GDPGUANOSINE-5'-DIPHOSPHATE D - 157
1r2q_A_1581r2q   A     GNPPHOSPHOAMINOPHOSPHONIC ACID-GUANYLATE ESTER T - 162
1r2q_A_1581r2q   A     GNPPHOSPHOAMINOPHOSPHONIC ACID-GUANYLATE ESTER S - 163
1r2q_A_1581r2q   A     GNPPHOSPHOAMINOPHOSPHONIC ACID-GUANYLATE ESTER A - 164
1r2q_A_1581r2q   A     GNPPHOSPHOAMINOPHOSPHONIC ACID-GUANYLATE ESTER K - 165
1r2q_A_1581r2q   A     GNPPHOSPHOAMINOPHOSPHONIC ACID-GUANYLATE ESTER T - 166
1uad_A_1521uad   A     GNPPHOSPHOAMINOPHOSPHONIC ACID-GUANYLATE ESTER S - 157
1uad_A_1521uad   A     GNPPHOSPHOAMINOPHOSPHONIC ACID-GUANYLATE ESTER A - 158
1uad_A_1521uad   A     GNPPHOSPHOAMINOPHOSPHONIC ACID-GUANYLATE ESTER K - 159
1uad_A_1521uad   A     GNPPHOSPHOAMINOPHOSPHONIC ACID-GUANYLATE ESTER T - 160
2ngr_A_1542ngr   A     GDPGUANOSINE-5'-DIPHOSPHATE L - 160
3rab_A_1603rab   A     GNPPHOSPHOAMINOPHOSPHONIC ACID-GUANYLATE ESTER S - 165
3rab_A_1603rab   A     GNPPHOSPHOAMINOPHOSPHONIC ACID-GUANYLATE ESTER A - 166
3rab_A_1603rab   A     GNPPHOSPHOAMINOPHOSPHONIC ACID-GUANYLATE ESTER K - 167
3rab_A_1603rab   A     GNPPHOSPHOAMINOPHOSPHONIC ACID-GUANYLATE ESTER D - 168
PDB Site Annotated loops in this subclass
LoopPDBChainSiteResidue
1oiv_A_1491oiv   A AC3GDP BINDING SITE FOR CHAIN BE - 162

Clusters included in this Subclass
CLUSTER: EH.8.0