ArchDB - Biological DataBase of Protein Loops

Grup de Recerca en Informàtica Biomèdica

Information on SUBCLASS 6.41.1

Subclass Accession number: 3381
Subclass: 6.41.1

PSSM

Type: EH beta-alpha
DB: ArchDB95

Image coordinates:

Rasmol PDB

Jmol PDB

Consensus coordinates:

Rasmol PDB

Jmol PDB

Number of loops: 4

Average sequence ID (%) : 43.5 +/- 20.9
Average RMSD (Å) : 0.425 +/- 0.126

Consensus geometry

d (Å): 13

delta (°): 90-135

theta (°): 135-180

rho (°): 315-360

Consensus Sequence:	hGTFDPhppG
(φψ)-conformation:	bealbwpbaa

Pattern:	x	[AG]	[ILV]	[CFY]	[GP]	[G]	[ST]	[F]	[D]	[P]	[IPV]	[HT]	[NY]	[G]	[H]	[IL]	x	[IMP]	[AIV]	[EKNT]	[ERT]	[AGLV]	[ALT]
Conservation:	-1.173	-0.227	-0.070	-0.269	-0.310	1.299	0.077	1.299	1.299	1.727	-0.671	-0.297	-0.312	1.299	2.156	0.065	-1.150	-0.887	-0.412	-0.763	-0.704	-1.164	-0.813

Loops included in this Subclass

Loop	PDB	Chain	Start	End	Sequence	Sec Struct	Ramachandran
1k4k_A_5	1k4k	A	5	27	QALFGGTFDPVHYGHLKPVETLA	EEEEEE--TT--HHHHHHHHHHH	bbbbbealbwxbaaaaaaaaaaa
1kam_A_3	1kam	A	4	26	IGIFGGTFDPPHNGHLLMANEVL	EEEEEE--SS--HHHHHHHHHHH	bxxbxealbwwbaaaaaaaaaaa
1o6b_A_4	1o6b	A	4	26	IAVCPGSFDPVTYGHLDIIKRGA	EEEEEE--TT--HHHHHHHHHHH	bbbbxealbwpbaaaaaaaaaaa
1qjc_A_4	1qjc	A	4	26	RAIYPGTFDPITNGHIDIVTRAT	EEEEEE--TT--HHHHHHHHHHH	bbbbxealbwxbaaaaaaaaaaa

PDB ligands within a cut-off distance of 6 Å in this subclass

Loop	PDB	Chain	Ligands	Residue
1k4k_A_5	1k4k	A	XEXENON	L - 7
1k4k_A_5	1k4k	A	XEXENON	F - 8
1k4k_A_5	1k4k	A	XEXENON	G - 9
1k4k_A_5	1k4k	A	XEXENON	F - 12
1k4k_A_5	1k4k	A	XEXENON	V - 15
1k4k_A_5	1k4k	A	XEXENON	H - 16
1k4k_A_5	1k4k	A	XEXENON	H - 19
1k4k_A_5	1k4k	A	XEXENON	L - 20
1o6b_A_4	1o6b	A	MSESELENOMETHIONINE	C - 7
1o6b_A_4	1o6b	A	ADPADENOSINE-5'-DIPHOSPHATE	C - 7
1o6b_A_4	1o6b	A	ADPADENOSINE-5'-DIPHOSPHATE	P - 8
1o6b_A_4	1o6b	A	ADPADENOSINE-5'-DIPHOSPHATE	G - 9
1o6b_A_4	1o6b	A	PO4PHOSPHATE ION	S - 10
1o6b_A_4	1o6b	A	ADPADENOSINE-5'-DIPHOSPHATE	S - 10
1o6b_A_4	1o6b	A	PO4PHOSPHATE ION	F - 11
1o6b_A_4	1o6b	A	ADPADENOSINE-5'-DIPHOSPHATE	F - 11
1o6b_A_4	1o6b	A	ADPADENOSINE-5'-DIPHOSPHATE	D - 12
1o6b_A_4	1o6b	A	PO4PHOSPHATE ION	T - 15
1o6b_A_4	1o6b	A	ADPADENOSINE-5'-DIPHOSPHATE	T - 15
1o6b_A_4	1o6b	A	ADPADENOSINE-5'-DIPHOSPHATE	Y - 16
1o6b_A_4	1o6b	A	ADPADENOSINE-5'-DIPHOSPHATE	G - 17
1o6b_A_4	1o6b	A	PO4PHOSPHATE ION	H - 18
1o6b_A_4	1o6b	A	ADPADENOSINE-5'-DIPHOSPHATE	H - 18
1o6b_A_4	1o6b	A	MSESELENOMETHIONINE	D - 20
1o6b_A_4	1o6b	A	ADPADENOSINE-5'-DIPHOSPHATE	D - 20
1o6b_A_4	1o6b	A	MSESELENOMETHIONINE	I - 21
1o6b_A_4	1o6b	A	ADPADENOSINE-5'-DIPHOSPHATE	I - 21
1o6b_A_4	1o6b	A	MSESELENOMETHIONINE	I - 22
1o6b_A_4	1o6b	A	MSESELENOMETHIONINE	R - 24
1o6b_A_4	1o6b	A	ADPADENOSINE-5'-DIPHOSPHATE	R - 24
1o6b_A_4	1o6b	A	MSESELENOMETHIONINE	G - 25

Clusters included in this Subclass

CLUSTER: EH.7.131