ArchDB - Biological DataBase of Protein Loops

Information on SUBCLASS 9.8.1

Subclass Accession number: 3524
Subclass: 9.8.1

Type: EH beta-alpha
DB: ArchDB95

Image coordinates:

Consensus coordinates:

Number of loops: 4

Average sequence ID (%) : 22.7 +/- 19.1
Average RMSD (Å) : 0.800 +/- 0.245

Consensus geometry

d (Å): 15

delta (°): 0-45

theta (°): 135-180

rho (°): 90-135

Consensus Sequence:	XhXXXXhhXhXXX
(φψ)-conformation:	bbFbaaaabppaa

Pattern:	[AG]	x	[IL]	[ITV]	x	[AIM]	[AGST]	[AS]	[FIKV]	[AES]	[AGSV]	[FILW]	x	[GP]	x	[EP]	[GNQS]	[LMY]	[AGIY]	[AGT]	[SY]	[GNS]	x	[AS]	[KR]	[AGM]	[A]	[LV]	[HRST]	x	[FLM]	x	[KQR]	[AST]	[AL]	[AS]
Conservation:	1.551	-1.143	1.306	0.242	-1.156	-0.225	-0.476	0.932	-1.151	-0.073	-0.982	-0.364	-1.657	0.484	-1.071	0.698	-0.476	0.122	-1.601	-0.215	1.128	0.543	-0.339	0.715	1.826	-0.577	2.055	0.926	-0.757	-1.714	0.399	-0.870	0.902	0.270	-0.179	0.926

Loops included in this Subclass

Loop	PDB	Chain	Start	End	Sequence	Sec Struct	Ramachandran
1hdr_*_124	1hdr	-	129	164	GLLTLAGAKAALDGTPGMIGYGMAKGAVHQLCQSLA	EEEEEE--GGGGS--TTBHHHHHHHHHHHHHHHHHH	xbbbbbxbaaaabxbaaaaaaaaaaaaaaaaaaaaa
1hxh_A_131	1hxh	A	131	166	GSIINMASVSSWLPIEQYAGYSASKAAVSALTRAAA	EEEEEE--GGGTS--TTBHHHHHHHHHHHHHHHHHH	ebbbbxFbaaaabxxaaaaaaaaaaaaaaaaaaaaa
1nxq_A_135	1nxq	A	135	170	ASIINMSSIEGFVGDPSLGAYNASKGAVRIMSKSAA	EEEEEE--GGGTS--TTBHHHHHHHHHHHHHHHHHH	xbbbbxFbaaaabxbaaaaaaaaaaaaaaaaaaaaa
1o5i_A_121	1o5i	A	121	156	GRIVAITSFSVISPIENLYTSNSARMALTGFLKTLS	EEEEEE--GGGTS--TTBHHHHHHHHHHHHHHHHHH	bbbbbxFbaaaabpxaaaaaaaaaaaaaaaaaaaaa

PDB ligands within a cut-off distance of 6 Å in this subclass

Loop	PDB	Chain	Ligands	Residue
1hdr_*_124	1hdr	*	NADNICOTINAMIDE-ADENINE-DINUCLEOTIDE	A - 134
1hdr_*_124	1hdr	*	NADNICOTINAMIDE-ADENINE-DINUCLEOTIDE	G - 135
1hdr_*_124	1hdr	*	NADNICOTINAMIDE-ADENINE-DINUCLEOTIDE	A - 136
1hdr_*_124	1hdr	*	NADNICOTINAMIDE-ADENINE-DINUCLEOTIDE	Y - 149
1hdr_*_124	1hdr	*	NADNICOTINAMIDE-ADENINE-DINUCLEOTIDE	K - 153
1nxq_A_135	1nxq	A	MGMAGNESIUM ION	V - 147

Clusters included in this Subclass