Logo
Information on SUBCLASS 5.5.1
Subclass Accession number: 357
Subclass: 5.5.1 PSSM
Type: HE alpha-beta
DB: ArchDB40

Image coordinates: Rasmol PDB Jmol PDB
Consensus coordinates: Rasmol PDB Jmol PDB

Conserved Annotation
GO : GO:0008168 (>75 %)  GO:0008757 (>75 %)  GO:0016741 (>75 %)  
SCOP : 53334 (>75 %)  53335 (>75 %)  
 Number of loops: 10

Average sequence ID (%) : 18.0 +/- 16.7
Average RMSD (Å) : 0.710 +/- 0.208

Consensus geometry
d (Å): 11 delta (°): 90-135 theta (°): 135-180 rho (°): 180-225
Consensus Sequence: XXcLXcphX
(φψ)-conformation: aalaaaabb
Pattern: xxx[AFILT]x[DHKNQRS]x[AFILV][AENRT]xx[DEGKN][ALV]x[DEKN][krty][FILTV][fitvw]
Conservation:-0.708-0.468-1.1220.013-0.6630.377-0.8841.1560.121-1.204-0.7310.6421.898-0.5962.167-0.0500.817-0.765
Loops included in this Subclass
LoopPDBChainStartEndSequenceSec StructRamachandran
1d1q_A_191d1q   A2441EAIFKHEVEKANLENRFNHHHHHHHHHHTT-GGGEEaaaaaaaaaaalaaaaba
1e79_A_2101e79   A213230VAQLVKRLTDADAMKYTIHHHHHHHHHHTT-GGGEEaaaaaaaaaaavaaaabb
1f3l_A_2861f3l   A287304LYQAMDIIRLNKLEDTIVHHHHHHHHHHTT-TTTEEaaaaaaaaaaavaaaabb
1h1d_A_931h1d   A96113AAITQQMLNFAGLQDKVTHHHHHHHHHHHT-TTTEEaaaaaaaaaaavaaaabb
1m1h_A_231m1h   A2744KENLLKVLELEGLKDLVDHHHHHHHHHHTT-GGGEEaaaaaaaaaaavaaaaba
1nv8_A_1541nv8   A157174VEIARKNAERHGVSDRFFHHHHHHHHHHTT-TTSEEaaaaaaaaaaavaaaabb
1o54_A_1351o54   A138155AKLAESNLTKWGLIERVTHHHHHHHHHHTT-GGGEEaaaaaaaaaaavaaaabb
1qlt_A_1481qlt   A148165YHDLHNYLEANNLRDKLWHHHHHHHHHHTTGGGTEEaaaaaaaaaaavaaaabb
1qzz_A_2151qzz   A218235AERARRRFADAGLADRVTHHHHHHHHHHTT-TTTEEaaaaaaaaaaavaaaabb
1r9l_A_1411r9l   A143160EGAINHQLAAYELTNTVTHHHHHHHHHHTT-TTTEEaaaaaaaaaaalaaaabb
PDB ligands within a cut-off distance of 6 Å in this subclass
LoopPDBChainLigandsResidue
1d1q_A_191d1q   A     4NP4-NITROPHENYL PHOSPHATE R - 19
1d1q_A_191d1q   A     4NP4-NITROPHENYL PHOSPHATE S - 20
1d1q_A_191d1q   A     4NP4-NITROPHENYL PHOSPHATE P - 21
1d1q_A_191d1q   A     4NP4-NITROPHENYL PHOSPHATE F - 46
1f3l_A_2861f3l   A     SAHS-ADENOSYL-L-HOMOCYSTEINE I - 286
1h1d_A_931h1d   A     SAMS-ADENOSYLMETHIONINE Y - 95
1nv8_A_1541nv8   A     SAMS-ADENOSYLMETHIONINE A - 156
1qlt_A_1481qlt   A     FADFLAVIN-ADENINE DINUCLEOTIDE Y - 148
1qzz_A_2151qzz   A     SAMS-ADENOSYLMETHIONINE P - 217
1qzz_A_2151qzz   A     ACTACETATE ION F - 225
1r9l_A_1411r9l   A     BETTRIMETHYL GLYCINE G - 141
1r9l_A_1411r9l   A     BETTRIMETHYL GLYCINE C - 142
1r9l_A_1411r9l   A     BETTRIMETHYL GLYCINE E - 143
1r9l_A_1411r9l   A     UNXUNKNOWN ATOM OR ION T - 160

Clusters included in this Subclass
CLUSTER: HE.5.36
CLUSTER: HE.7.6