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Information on SUBCLASS 16.8.1
Subclass Accession number: 3619
Subclass: 16.8.1 PSSM
Type: EH beta-alpha
DB: ArchDB95

Image coordinates: Rasmol PDB Jmol PDB
Consensus coordinates: Rasmol PDB Jmol PDB

Conserved Annotation
EC : 3.1 (>75 %)  3.1 (>75 %)  3.1.6 (>75 %)  3.1.6 (>75 %)  
GO : GO:0004065 (>75 %)  GO:0004065 (>75 %)  GO:0005509 (>50 %)  GO:0008484 (>75 %)  GO:0008484 (>75 %)  GO:0016788 (>75 %)  GO:0016788 (>75 %)  
SCOP : 53648 (>75 %)  53648 (>75 %)  53649 (>75 %)  53649 (>75 %)  53653 (>75 %)  53653 (>75 %)  
Number of loops: 3

Average sequence ID (%) : 39.6 +/- 14.1
Average RMSD (Å) : 0.867 +/- 0.208

Consensus geometry
d (Å): 15 delta (°): 90-135 theta (°): 90-135 rho (°): 180-225
Consensus Sequence: ADDLGhXDhGhXGXXXXTXX
(φψ)-conformation: pblppaaapaaagpappbaa
Pattern: [HN][FIL][LV][FLV][IL][FLV][A][D][D][L][G][FWY][GNS][D][ILV][G][ACF][FHY][G]x[EPR]x[ARS][T][PT][HNP]xx[AD]x[AL][AI]
Conservation:0.547-0.515-0.188-0.7580.068-0.7580.5801.6741.6740.5801.6740.580-0.5151.674-0.1501.674-0.9410.1541.674-0.880-0.941-0.992-0.9411.127-0.047-0.697-1.082-1.118-0.820-0.906-0.730-0.700
Loops included in this Subclass
LoopPDBChainStartEndSequenceSec StructRamachandran
1auk_*_221auk   -2253NIVLIFADDLGYGDLGCYGHPSSTTPNLDQLAEEEEEEESS--TTTSGGGT-SS---HHHHHHHxbbbxbxblbxaaaxaaagpaapbaaaaaaaa
1fsu_*_461fsu   -4677HLVFLLADDLGWNDVGFHGSRIRTPHLDALAAEEEEEEESS--TTSSGGGT-SS--HHHHHHHHxbbbbbxbvxxaaabaaavxaxxbaaaaaaaa
1hdh_A_61hdh   A637NFLVIVADDLGFSDIGAFGGEIATPNLDALAIEEEEEEESS--TT-SGGGT--S--HHHHHHHHxbbbbbxbvxxaaaxaaagxaxxaaaaaaaaa
PDB ligands within a cut-off distance of 6 Å in this subclass
LoopPDBChainLigandsResidue
1auk_*_221auk   *     FGL2-AMINOPROPANEDIOIC ACID F - 27
1auk_*_221auk   *     MGMAGNESIUM ION A - 28
1auk_*_221auk   *     FGL2-AMINOPROPANEDIOIC ACID D - 29
1auk_*_221auk   *     MGMAGNESIUM ION D - 29
1auk_*_221auk   *     FGL2-AMINOPROPANEDIOIC ACID D - 30
1auk_*_221auk   *     MGMAGNESIUM ION D - 30
1fsu_*_461fsu   *     CACALCIUM ION A - 52
1fsu_*_461fsu   *     ALS2-AMINO-3-OXO-4-SULFO-BUTYRIC ACID D - 53
1fsu_*_461fsu   *     CACALCIUM ION D - 53
1fsu_*_461fsu   *     ALS2-AMINO-3-OXO-4-SULFO-BUTYRIC ACID D - 54
1fsu_*_461fsu   *     CACALCIUM ION D - 54
1hdh_A_61hdh   A     CACALCIUM ION A - 12
1hdh_A_61hdh   A     FGL2-AMINOPROPANEDIOIC ACID D - 13
1hdh_A_61hdh   A     CACALCIUM ION D - 13
1hdh_A_61hdh   A     FGL2-AMINOPROPANEDIOIC ACID D - 14
1hdh_A_61hdh   A     CACALCIUM ION D - 14
PDB Site Annotated loops in this subclass
LoopPDBChainSiteResidue
1fsu_*_461fsu   * MEBTHIS IS THE METAL BINDING SITE. THE METAL WAS IDENTIFIED AS CALCIUM BY ITS PEAK HEIGHT IN DIFFERENCE ELECTRON DENSITY MAPS, BY SUCCESSIVE TEMPERATURE FACTOR REFINEMENT AND BY THE NATURE AND GEOMETRY OF THE COORDINATING LIGANDS.D - 53
1fsu_*_461fsu   * MEBTHIS IS THE METAL BINDING SITE. THE METAL WAS IDENTIFIED AS CALCIUM BY ITS PEAK HEIGHT IN DIFFERENCE ELECTRON DENSITY MAPS, BY SUCCESSIVE TEMPERATURE FACTOR REFINEMENT AND BY THE NATURE AND GEOMETRY OF THE COORDINATING LIGANDS.D - 54

Clusters included in this Subclass
CLUSTER: EH.17.10