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Information on SUBCLASS 25.1.1
Subclass Accession number: 3634
Subclass: 25.1.1 PSSM
Type: EH beta-alpha
DB: ArchDB95

Image coordinates: Rasmol PDB Jmol PDB
Consensus coordinates: Rasmol PDB Jmol PDB

Conserved Annotation
GO : GO:0004553 (>75 %)  GO:0005529 (>50 %)  GO:0016798 (>75 %)  GO:0030246 (>50 %)  
SCOP : 51445 (>75 %)  51487 (>75 %)  
 Number of loops: 3

Average sequence ID (%) : 75.8 +/- -35.9
Average RMSD (Å) : 0.233 +/- 0.058

Consensus geometry
d (Å): 15 delta (°): 45-90 theta (°): 135-180 rho (°): 225-270
Consensus Sequence: TVWGVpDppSWRSXXTPLLFccDhpKKhA
(φψ)-conformation: bppeabaaapaaaaalababpaalpppaa
Pattern: [C][LT][G][I][T][V][W][G][V][RT][D][KST][DY][S][W][R][S][EG][DGQ][T][P][L][L][F][DN][GN][D][GY][NS][K][K][AP][A][Y][DT][A][V][L][ADN][A]
Conservation:1.971-1.1250.693-0.1580.267-0.1582.8220.693-0.158-1.0050.693-1.199-1.122-0.1582.8220.267-0.158-1.065-1.3410.2671.119-0.158-0.1580.693-0.367-0.5640.693-1.122-0.6070.2670.267-0.937-0.1581.119-0.911-0.158-0.158-0.158-1.388-0.158
Loops included in this Subclass
LoopPDBChainStartEndSequenceSec StructRamachandran
1nq6_A_2621nq6   A262301CTGITVWGVTDKYSWRSGGTPLLFDGDYNKKPAYDAVLAAEEEEEES-S-GGG-TTGGG--SSB-TTS-B-HHHHHHHHHxaebbxxeabaaaxaaaaalababxaavxpxaaaaaaaaa
1od8_A_2601od8   A260299CLGITVWGVRDSDSWRSEQTPLLFNNDGSKKAAYTAVLDAEEEEEES-SBGGGSTTGGG--SSB-TTS-B-HHHHHHHHHxaebbxxeaxaaaxaaaaalababxaavxxxaaaaaaaaa
1v6w_A_2601v6w   A260299CLGITVWGVRDTDSWRSGDTPLLFNGDGSKKAAYTAVLNAEEEEEES-SBGGGSTTGGG--SSB-TT--B-HHHHHHHHHxaebbxxeabaaaxaaaaalababxaavxxxaaaaaaaaa
PDB ligands within a cut-off distance of 6 Å in this subclass
LoopPDBChainLigandsResidue
1nq6_A_2621nq6   A     MGMAGNESIUM ION L - 299
1nq6_A_2621nq6   A     MGMAGNESIUM ION A - 300
1nq6_A_2621nq6   A     MGMAGNESIUM ION A - 301
1od8_A_2601od8   A     IMDIMIDAZOLE C - 260
1od8_A_2601od8   A     IMDIMIDAZOLE L - 261
1od8_A_2601od8   A     IMDIMIDAZOLE G - 262
1od8_A_2601od8   A     XDLXYLOSE-DERIVED ISOFAGOMINE LACTAM W - 266
1od8_A_2601od8   A     XYPBETA-D-XYLOPYRANOSE W - 266
1od8_A_2601od8   A     XDLXYLOSE-DERIVED ISOFAGOMINE LACTAM W - 274
1od8_A_2601od8   A     XYPBETA-D-XYLOPYRANOSE W - 274
1od8_A_2601od8   A     IMDIMIDAZOLE W - 274
1od8_A_2601od8   A     XYPBETA-D-XYLOPYRANOSE R - 275
1od8_A_2601od8   A     IMDIMIDAZOLE R - 275
PDB Site Annotated loops in this subclass
LoopPDBChainSiteResidue
1od8_A_2601od8   A AC7IMD BINDING SITE FOR CHAIN AC - 260
1od8_A_2601od8   A AC7IMD BINDING SITE FOR CHAIN AL - 261
1od8_A_2601od8   A AC9XDL BINDING SITE FOR CHAIN AW - 266
1od8_A_2601od8   A AC9XDL BINDING SITE FOR CHAIN AW - 274
1od8_A_2601od8   A AC6XYS BINDING SITE FOR CHAIN AR - 275
1od8_A_2601od8   A AC1NA BINDING SITE FOR CHAIN AT - 294
1od8_A_2601od8   A AC1NA BINDING SITE FOR CHAIN AD - 298

Clusters included in this Subclass
CLUSTER: EH.24.2