Information on SUBCLASS 5.8.3 |
Subclass Accession number: 365
Subclass: 5.8.3 Type: HE alpha-beta DB: ArchDB40 Image coordinates: Consensus coordinates: Conserved Annotation GO : GO:0046914 (>75 %) SCOP : 51734 (>75 %) 51735 (>75 %) 53719 (>50 %) 53720 (>50 %) 53721 (>50 %) |
Number of loops: 3 Average sequence ID (%) : 11.8 +/- 18.1 Average RMSD (Å) : 0.500 +/- 0.173 Consensus geometry
|
Consensus Sequence: | hXXXpXpXh |
(φψ)-conformation: | aapaapabb |
Pattern: | [AGV] | x | [AY] | x | x | [AMV] | x | [HW] | [AEP] | [DNR] | [ITV] | [DKR] | [EFK] | [IV] | [AGN] | [CF] | [GT] |
Conservation: | -0.846 | 0.901 | -0.083 | -0.846 | -0.962 | -0.264 | -1.195 | 2.163 | -0.613 | -0.032 | 0.201 | -0.148 | -1.078 | 1.944 | -0.381 | 1.040 | 0.200 |
Loops included in this Subclass |
Loop | PDB | Chain | Start | End | Sequence | Sec Struct | Ramachandran |
1o04_A_228 | 1o04 | A | 228 | 244 | AGAAIASHEDVDKVAFT | HHHHHHT-TT--EEEEE | aaaaaaaxaaxabbbbb |
1qnx_A_151 | 1qnx | A | 155 | 171 | GHYTQMVWANTKEVGCG | HHHHHHT-TT--EEEEE | aaaaaaaxaaxabbbbb |
1uzb_A_242 | 1uzb | A | 243 | 259 | VGAYLVEHPRIRFINFT | HHHHHHT-TT--EEEEE | aaaaaaaxaaxabbbbb |
PDB ligands within a cut-off distance of 6 Å in this subclass |
Loop | PDB | Chain | Ligands | Residue |
1o04_A_228 | 1o04 | A | NADNICOTINAMIDE-ADENINE-DINUCLEOTIDE | A - 228 |
1o04_A_228 | 1o04 | A | NADNICOTINAMIDE-ADENINE-DINUCLEOTIDE | G - 229 |
1o04_A_228 | 1o04 | A | NADNICOTINAMIDE-ADENINE-DINUCLEOTIDE | A - 230 |
1o04_A_228 | 1o04 | A | NADNICOTINAMIDE-ADENINE-DINUCLEOTIDE | A - 231 |
1o04_A_228 | 1o04 | A | NADNICOTINAMIDE-ADENINE-DINUCLEOTIDE | A - 233 |
1o04_A_228 | 1o04 | A | GAIGUANIDINE | D - 239 |
1o04_A_228 | 1o04 | A | NADNICOTINAMIDE-ADENINE-DINUCLEOTIDE | F - 243 |
1o04_A_228 | 1o04 | A | NADNICOTINAMIDE-ADENINE-DINUCLEOTIDE | T - 244 |
Clusters included in this Subclass |
CLUSTER: HE.7.66 |