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Information on SUBCLASS 1.2.3
Subclass Accession number: 3655
Subclass: 1.2.3 PSSM
Type: AR beta-beta link
DB: ArchDB95

Image coordinates: Rasmol PDB Jmol PDB
Consensus coordinates: Rasmol PDB Jmol PDB
Number of loops: 44

Average sequence ID (%) : 6.9 +/- 13.4
Average RMSD (Å) : 0.518 +/- 0.166

Consensus geometry
d (Å): 7 delta (°): 0-45 theta (°): 45-90 rho (°): 90-135
Consensus Sequence: XXXXX
(φψ)-conformation: bbabb
Pattern: xxxxxxx
Conservation:-1.0001.4950.023-0.2690.052-1.300-1.000
Loops included in this Subclass
LoopPDBChainStartEndSequenceSec StructRamachandran
1a2z_A_771a2z   A7884TVERIAVEEE-EEEbbxabbb
1a8h_*_2011a8h   -201206.LSISRP.EE-EEE.bxabbp
1am5_*_1901am5   -192198VALDGITEEE-EEEbbbabbb
1avb_A_521avb   A5256.IQIND..EE-EE..bxabb.
1bkc_A_3821bkc   A384389LTSTKN.EEESEE.bbbabb.
1d2k_A_2861d2k   A289295GMPLYGREEESEEExbxabbb
1dar_*_1611dar   -161167PVVMQLPEEE-EEExbxabbx
1dhk_B_491dhk   B4953.IQIRD..EESEE..bxabx.
1e3p_A_3971e3p   A397402.RKRYMH.EESEEE.bbabbb
1edq_A_4371edq   A440446GTAMYGREEESEEExbbabbb
1edt_*_2111edt   -211216.LSPAAV.EE-EEE.bbaxbb
1eje_A_411eje   A4450APFSFTMEEE-SEEbxbaxbb
1elj_A_1071elj   A107112.HYYALP.EE-EEE.bxabbx
1fx5_A_551fx5   A5559.IHIWN..EE-EE..bxabb.
1g2i_A_471g2i   A4853VKVDLT.EEE-EE.bxxabx.
1gmu_A_21gmu   A27LYLTQR.EEE-EE.xbxabb.
1h0c_A_1501h0c   A152157FLTHGE.EEESEE.bbxabx.
1h65_A_1191h65   A119124.TIDVLL.EE-EEE.bxabbb
1hjx_A_2541hjx   A257263GIPTFGREEESEEExbxabbb
1hkk_A_2601hkk   A263269GMPTYGREEESEEExbxabbb
1htr_B_1921htr   B193199IGIEEFLEEE-EEEbxbabbb
1i0r_A_231i0r   A2733QIANTVFEEES-EEbxbaxbb
1itx_A_3311itx   A334340GVPFYGREEESEEExbxabbb
1iu8_A_731iu8   A7480SVERVAVEEE-EEEbbxabbb
1jnd_A_2721jnd   A275281GVATYGNEEESEEExbbabbx
1jr2_A_1621jr2   A164170SITVYQTEEE-EEExbxabbx
1jr2_A_291jr2   A3238LIPVLSFEEE-EEEbbxabbb
1kek_A_2971kek   A300306IKVRLYREEESEEEbxxaxab
1kfw_A_3211kfw   A324330GLAAYGREEESEEExbbabbb
1ln1_A_1501ln1   A150156IRVKQYKEEE--EExxxabbb
1mnn_A_1481mnn   A148154LRVQYFAEE--EEEbxxabxb
1ocx_A_1071ocx   A107112HIYTAT.EEE-EE.bbbaxb.
1ow1_A_35471ow1   A35473553LRIAQRMEEE-EEExxxabbb
1qf5_A_3401qf5   A342348KLCVAYREEE-EEEbbpabbb
1qw9_A_4051qw9   A405410.VPYLES.EESEEE.xxaxbb
1s2b_A_1891s2b   A189194.QDVTDC.EE-EEE.bxabbx
1ukg_A_561ukg   A5660.VHLWE..EE-EE..xxabb.
1usc_A_311usc   A3541CPAVWNTEEESSEEbxbaxbb
1v33_A_701v33   A7278YSSVALYEEESEEEbbxaxbb
2apr_*_2842apr   -285291CIAGFGYEEESEEEbxxabbb
2tgi_*_782tgi   -7884CVSQDLEEEE-SEExbpabbb
3mbp_*_1023mbp   -102107.KLIAYP.EE-SEE.xxabxx
3thi_A_1043thi   A104109.EVYGLP.EE--EE.bxabbp
7aat_A_1547aat   A157162AYRYYD.EEE-EE.bbxaxb.
PDB ligands within a cut-off distance of 6 Å in this subclass
LoopPDBChainLigandsResidue
1avb_A_521avb   A     NAGN-ACETYL-D-GLUCOSAMINE Q - 53
1avb_A_521avb   A     NAGN-ACETYL-D-GLUCOSAMINE N - 55
1avb_A_521avb   A     NAGN-ACETYL-D-GLUCOSAMINE D - 56
1bkc_A_3821bkc   A     INN3,N(D,L-[2-(HYDROXYAMINO-CARBONYL)METHYL]-4-METHYL PENTANOYL)L-3-(TERT-BUTYL)GLYCYL-L-ALANINE N - 389
1e3p_A_3971e3p   A     WO4TUNGSTATE(VI)ION Y - 404
1eje_A_411eje   A     NINICKEL (II) ION N - 42
1eje_A_411eje   A     FMNFLAVIN MONONUCLEOTIDE N - 42
1eje_A_411eje   A     NINICKEL (II) ION A - 43
1eje_A_411eje   A     FMNFLAVIN MONONUCLEOTIDE A - 43
1eje_A_411eje   A     NINICKEL (II) ION A - 44
1eje_A_411eje   A     FMNFLAVIN MONONUCLEOTIDE A - 44
1eje_A_411eje   A     FMNFLAVIN MONONUCLEOTIDE P - 45
1eje_A_411eje   A     FMNFLAVIN MONONUCLEOTIDE F - 46
1eje_A_411eje   A     FMNFLAVIN MONONUCLEOTIDE S - 47
1eje_A_411eje   A     FMNFLAVIN MONONUCLEOTIDE F - 48
1eje_A_411eje   A     FMNFLAVIN MONONUCLEOTIDE T - 49
1elj_A_1071elj   A     GLCGLUCOSE E - 116
1h0c_A_1501h0c   A     PLPPYRIDOXAL-5'-PHOSPHATE T - 154
1h0c_A_1501h0c   A     PLPPYRIDOXAL-5'-PHOSPHATE G - 156
1h0c_A_1501h0c   A     PLPPYRIDOXAL-5'-PHOSPHATE E - 157
1h65_A_1191h65   A     MSESELENOMETHIONINE L - 123
1h65_A_1191h65   A     MSESELENOMETHIONINE L - 124
1h65_A_1191h65   A     MSESELENOMETHIONINE Y - 125
1h65_A_1191h65   A     MSESELENOMETHIONINE V - 126
1h65_A_1191h65   A     MSESELENOMETHIONINE D - 127
1hjx_A_2541hjx   A     GOLGLYCEROL F - 261
1hjx_A_2541hjx   A     GOLGLYCEROL R - 263
1hkk_A_2601hkk   A     NAAN-ACETYL-D-ALLOSAMINE Y - 267
1hkk_A_2601hkk   A     AMIALLOSAMIZOLINE Y - 267
1hkk_A_2601hkk   A     NAAN-ACETYL-D-ALLOSAMINE R - 269
1hkk_A_2601hkk   A     AMIALLOSAMIZOLINE R - 269
1i0r_A_231i0r   A     FMNFLAVIN MONONUCLEOTIDE C - 25
1i0r_A_231i0r   A     FMNFLAVIN MONONUCLEOTIDE G - 26
1i0r_A_231i0r   A     FMNFLAVIN MONONUCLEOTIDE Q - 27
1i0r_A_231i0r   A     FMNFLAVIN MONONUCLEOTIDE I - 28
1i0r_A_231i0r   A     FMNFLAVIN MONONUCLEOTIDE A - 29
1i0r_A_231i0r   A     FMNFLAVIN MONONUCLEOTIDE N - 30
1i0r_A_231i0r   A     FMNFLAVIN MONONUCLEOTIDE T - 31
1i0r_A_231i0r   A     FMNFLAVIN MONONUCLEOTIDE V - 32
1itx_A_3311itx   A     GOLGLYCEROL W - 342
1itx_A_3311itx   A     GOLGLYCEROL D - 343
1kfw_A_3211kfw   A     GOLGLYCEROL Y - 328
1kfw_A_3211kfw   A     GOLGLYCEROL R - 330
1ln1_A_1501ln1   A     DLP1,2-DILINOLEOYL-SN-GLYCERO-3-PHOSPHOCHOLINE Y - 155
1ln1_A_1501ln1   A     DLP1,2-DILINOLEOYL-SN-GLYCERO-3-PHOSPHOCHOLINE Q - 157
1ln1_A_1501ln1   A     DLP1,2-DILINOLEOYL-SN-GLYCERO-3-PHOSPHOCHOLINE L - 159
1ln1_A_1501ln1   A     DLP1,2-DILINOLEOYL-SN-GLYCERO-3-PHOSPHOCHOLINE A - 160
1ln1_A_1501ln1   A     DLP1,2-DILINOLEOYL-SN-GLYCERO-3-PHOSPHOCHOLINE I - 161
1ocx_A_1071ocx   A     PBMTRIMETHYL LEAD ION A - 111
1ocx_A_1071ocx   A     PBMTRIMETHYL LEAD ION T - 112
1ukg_A_561ukg   A     PCAPYROGLUTAMIC ACID H - 57
1ukg_A_561ukg   A     CACALCIUM ION H - 57
1usc_A_311usc   A     FMNFLAVIN MONONUCLEOTIDE N - 33
1usc_A_311usc   A     FMNFLAVIN MONONUCLEOTIDE F - 34
1usc_A_311usc   A     FMNFLAVIN MONONUCLEOTIDE C - 35
1usc_A_311usc   A     FMNFLAVIN MONONUCLEOTIDE P - 36
1usc_A_311usc   A     FMNFLAVIN MONONUCLEOTIDE A - 37
1usc_A_311usc   A     FMNFLAVIN MONONUCLEOTIDE V - 38
1usc_A_311usc   A     ACTACETATE ION V - 38
1usc_A_311usc   A     FMNFLAVIN MONONUCLEOTIDE W - 39
1usc_A_311usc   A     ACTACETATE ION W - 39
1usc_A_311usc   A     FMNFLAVIN MONONUCLEOTIDE N - 40
1v33_A_701v33   A     PO4PHOSPHATE ION Y - 72
3mbp_*_1023mbp   *     GLCGLUCOSE E - 111
PDB Site Annotated loops in this subclass
LoopPDBChainSiteResidue
1a2z_A_771a2z   A AVECATALYTIC TRIAD.E - 80
1h0c_A_1501h0c   A AC1PLP BINDING SITE FOR CHAIN AG - 156
1hjx_A_2541hjx   A CC2GOL BINDING SITE FOR CHAIN AF - 261
1hkk_A_2601hkk   A AC2NAA BINDING SITE FOR CHAIN AY - 267
1hkk_A_2601hkk   A AC4NAA BINDING SITE FOR CHAIN AR - 269
1ocx_A_1071ocx   A AC3PBM BINDING SITE FOR CHAIN AA - 111
1usc_A_311usc   A AC1FMN BINDING SITE FOR CHAIN AN - 33
1usc_A_311usc   A AC1FMN BINDING SITE FOR CHAIN AC - 35
1usc_A_311usc   A AC1FMN BINDING SITE FOR CHAIN AP - 36
1usc_A_311usc   A AC1FMN BINDING SITE FOR CHAIN AW - 39
3thi_A_1043thi   A NUCCYS 113 IS THE ACTIVE SITE NUCLEOPHILE.C - 113

Clusters included in this Subclass
CLUSTER: AR.0.2
CLUSTER: AR.1.6
CLUSTER: AR.2.13