ArchDB - Biological DataBase of Protein Loops

Grup de Recerca en Informàtica Biomèdica

Information on SUBCLASS 1.2.9

Subclass Accession number: 3661
Subclass: 1.2.9

PSSM

Type: AR beta-beta link
DB: ArchDB95

Image coordinates:

Rasmol PDB

Jmol PDB

Consensus coordinates:

Rasmol PDB

Jmol PDB

Number of loops: 21

Average sequence ID (%) : 21.0 +/- 24.7
Average RMSD (Å) : 0.448 +/- 0.229

Consensus geometry

d (Å): 9

delta (°): 0-45

theta (°): 45-90

rho (°): 135-180

Consensus Sequence:	XXXpc
(φψ)-conformation:	bbabg

Pattern:	x	x	x	[adegknqst]	[adgn]	[ilmtv]	x	x
Conservation:	-0.668	-0.672	-0.282	0.276	2.170	0.508	-0.456	-0.877

Loops included in this Subclass

Loop	PDB	Chain	Start	End	Sequence	Sec Struct	Ramachandran
1c1e_L_154	1c1e	L	154	161	ERQNGVLN	EE-SSEEE	xbabvxbb
1d2o_A_673	1d2o	A	679	683	LDEKA...	EESEE...	xxabb...
1dj7_B_26	1dj7	B	26	33	FDLQGMEG	EE-TT-EE	bxapgxbb
1dyn_A_53	1dyn	A	57	64	LSVDNLKL	EE-TTEEE	bxaxvxbb
1fng_A_126	1fng	A	127	134	PVTEGVSE	EE-SSEEE	pbabvbbb
1hxr_A_62	1hxr	A	64	71	VLEEHWLV	EE--EEEE	xxabbbxb
1i3r_B_162	1i3r	B	163	170	EEKTGIVS	EE-SSEEE	bxabvxbb
1i4f_A_222	1i4f	A	223	230	DQTQDTEL	EE-TTEEE	pbaxlbbb
1jk8_B_136	1jk8	B	137	144	EETTGVVS	EE-SSEEE	xxaxvbbb
1k2d_A_126	1k2d	A	127	134	SVADGVYE	EE-TTEEE	pbaxvbbb
1kcv_L_153	1kcv	L	154	161	KRANGTAN	EE-TTEEE	xbaxvbbb
1kgc_E_167	1kgc	E	168	175	EVHSGVST	EE-TTEEE	xbaxvbbb
1mju_L_153	1mju	L	154	161	ERQNGVLN	EE-TTEEE	xbaxvbbb
1oga_E_164	1oga	E	165	172	EVHSGVST	EE-SSEEE	xbabvbbb
1q0x_L_153	1q0x	L	154	161	PVTAGMET	EE-TTEEE	pbaxvbbb
1r53_A_64	1r53	A	64	70	EIQSGTE.	EE-SSEE.	bxabvbb.
1sat_*_146	1sat	-	146	153	QDLGGQTW	EE-TTEEE	bxapvxbb
1uvq_A_129	1uvq	A	130	137	SVTEGVSE	EE-TTEEE	pbaxvbbb
1uvq_B_136	1uvq	B	137	144	EETAGVVS	EE-TTEEE	xxaxvbbb
7fab_L_149	7fab	L	150	157	PVKAGVET	EE-TTEEE	xbaxvxbb
8fab_A_153	8fab	A	154	161	PIKAGVET	EE-TTEEE	wbaxvbbb

PDB ligands within a cut-off distance of 6 Å in this subclass

Loop	PDB	Chain	Ligands	Residue
1i3r_B_162	1i3r	B	NAGN-ACETYL-D-GLUCOSAMINE	V - 169
1k2d_A_126	1k2d	A	NAGN-ACETYL-D-GLUCOSAMINE	S - 127

PDB Site Annotated loops in this subclass

Loop	PDB	Chain	Site	Residue
1uvq_A_129	1uvq	A	AC3FUC BINDING SITE FOR CHAIN B	Q - 129
1uvq_A_129	1uvq	A	AC3FUC BINDING SITE FOR CHAIN B	S - 130

Clusters included in this Subclass

CLUSTER: AR.2.32

CLUSTER: AR.3.34