Information on SUBCLASS 1.2.22 |
Subclass Accession number: 3674
Subclass: 1.2.22 Type: AR beta-beta link DB: ArchDB95 Image coordinates: Consensus coordinates: Conserved Annotation GO : GO:0003676 (>75 %) GO:0016829 (>75 %) |
Number of loops: 5 Average sequence ID (%) : 18.6 +/- 32.3 Average RMSD (Å) : 0.680 +/- 0.130 Consensus geometry
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Consensus Sequence: | XXXXh |
(φψ)-conformation: | bbabb |
Pattern: | x | x | [dgpv] | [deg] | [flm] | x | [aflv] |
Conservation: | -0.247 | 0.135 | -1.191 | 1.087 | 1.479 | -1.042 | -0.221 |
Loops included in this Subclass |
Loop | PDB | Chain | Start | End | Sequence | Sec Struct | Ramachandran |
1bpy_A_187 | 1bpy | A | 187 | 193 | SSGDMDV | EESSEEE | bxabbbb |
1jn3_A_187 | 1jn3 | A | 187 | 193 | SSGDMDV | EES-EEE | bbabbbb |
1jny_A_322 | 1jny | A | 322 | 328 | VADEFTA | EESEEEE | bxabbbb |
1obo_A_1137 | 1obo | A | 1137 | 1143 | KFVGLAL | EESSEEE | bxabxbb |
1qdl_A_217 | 1qdl | A | 222 | 228 | SSPELLF | EES-EEE | bxabxab |
PDB ligands within a cut-off distance of 6 Å in this subclass |
Loop | PDB | Chain | Ligands | Residue |
1bpy_A_187 | 1bpy | A | DCT2',3'-DIDEOXYCYTIDINE 5'-TRIPHOSPHATE | S - 187 |
1bpy_A_187 | 1bpy | A | DCT2',3'-DIDEOXYCYTIDINE 5'-TRIPHOSPHATE | S - 188 |
1bpy_A_187 | 1bpy | A | MGMAGNESIUM ION | S - 188 |
1bpy_A_187 | 1bpy | A | DCT2',3'-DIDEOXYCYTIDINE 5'-TRIPHOSPHATE | G - 189 |
1bpy_A_187 | 1bpy | A | MGMAGNESIUM ION | G - 189 |
1bpy_A_187 | 1bpy | A | DOC2',3'-DIDEOXYCYTIDINE-5'-MONOPHOSPHATE | D - 190 |
1bpy_A_187 | 1bpy | A | DCT2',3'-DIDEOXYCYTIDINE 5'-TRIPHOSPHATE | D - 190 |
1bpy_A_187 | 1bpy | A | MGMAGNESIUM ION | D - 190 |
1bpy_A_187 | 1bpy | A | DCT2',3'-DIDEOXYCYTIDINE 5'-TRIPHOSPHATE | M - 191 |
1bpy_A_187 | 1bpy | A | MGMAGNESIUM ION | M - 191 |
1bpy_A_187 | 1bpy | A | DOC2',3'-DIDEOXYCYTIDINE-5'-MONOPHOSPHATE | D - 192 |
1bpy_A_187 | 1bpy | A | DCT2',3'-DIDEOXYCYTIDINE 5'-TRIPHOSPHATE | D - 192 |
1bpy_A_187 | 1bpy | A | MGMAGNESIUM ION | D - 192 |
1obo_A_1137 | 1obo | A | FMNFLAVIN MONONUCLEOTIDE | L - 1143 |
PDB Site Annotated loops in this subclass |
Loop | PDB | Chain | Site | Residue |
1bpy_A_187 | 1bpy | A | ACTACTIVE SITE OF NUCLEOTIDYL TRANSFER. | D - 190 |
1bpy_A_187 | 1bpy | A | ACTACTIVE SITE OF NUCLEOTIDYL TRANSFER. | D - 192 |
1obo_A_1137 | 1obo | A | SOASO4 BINDING SITE FOR CHAIN A | K - 1137 |
Clusters included in this Subclass |
CLUSTER: AR.1.49 |