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Information on SUBCLASS 1.2.22
Subclass Accession number: 3674
Subclass: 1.2.22 PSSM
Type: AR beta-beta link
DB: ArchDB95

Image coordinates: Rasmol PDB Jmol PDB
Consensus coordinates: Rasmol PDB Jmol PDB

Conserved Annotation
GO : GO:0003676 (>75 %)  GO:0016829 (>75 %)  
Number of loops: 5

Average sequence ID (%) : 18.6 +/- 32.3
Average RMSD (Å) : 0.680 +/- 0.130

Consensus geometry
d (Å): 7 delta (°): 45-90 theta (°): 45-90 rho (°): 45-90
Consensus Sequence: XXXXh
(φψ)-conformation: bbabb
Pattern: xx[dgpv][deg][flm]x[aflv]
Conservation:-0.2470.135-1.1911.0871.479-1.042-0.221
Loops included in this Subclass
LoopPDBChainStartEndSequenceSec StructRamachandran
1bpy_A_1871bpy   A187193SSGDMDVEESSEEEbxabbbb
1jn3_A_1871jn3   A187193SSGDMDVEES-EEEbbabbbb
1jny_A_3221jny   A322328VADEFTAEESEEEEbxabbbb
1obo_A_11371obo   A11371143KFVGLALEESSEEEbxabxbb
1qdl_A_2171qdl   A222228SSPELLFEES-EEEbxabxab
PDB ligands within a cut-off distance of 6 Å in this subclass
LoopPDBChainLigandsResidue
1bpy_A_1871bpy   A     DCT2',3'-DIDEOXYCYTIDINE 5'-TRIPHOSPHATE S - 187
1bpy_A_1871bpy   A     DCT2',3'-DIDEOXYCYTIDINE 5'-TRIPHOSPHATE S - 188
1bpy_A_1871bpy   A     MGMAGNESIUM ION S - 188
1bpy_A_1871bpy   A     DCT2',3'-DIDEOXYCYTIDINE 5'-TRIPHOSPHATE G - 189
1bpy_A_1871bpy   A     MGMAGNESIUM ION G - 189
1bpy_A_1871bpy   A     DOC2',3'-DIDEOXYCYTIDINE-5'-MONOPHOSPHATE D - 190
1bpy_A_1871bpy   A     DCT2',3'-DIDEOXYCYTIDINE 5'-TRIPHOSPHATE D - 190
1bpy_A_1871bpy   A     MGMAGNESIUM ION D - 190
1bpy_A_1871bpy   A     DCT2',3'-DIDEOXYCYTIDINE 5'-TRIPHOSPHATE M - 191
1bpy_A_1871bpy   A     MGMAGNESIUM ION M - 191
1bpy_A_1871bpy   A     DOC2',3'-DIDEOXYCYTIDINE-5'-MONOPHOSPHATE D - 192
1bpy_A_1871bpy   A     DCT2',3'-DIDEOXYCYTIDINE 5'-TRIPHOSPHATE D - 192
1bpy_A_1871bpy   A     MGMAGNESIUM ION D - 192
1obo_A_11371obo   A     FMNFLAVIN MONONUCLEOTIDE L - 1143
PDB Site Annotated loops in this subclass
LoopPDBChainSiteResidue
1bpy_A_1871bpy   A ACTACTIVE SITE OF NUCLEOTIDYL TRANSFER.D - 190
1bpy_A_1871bpy   A ACTACTIVE SITE OF NUCLEOTIDYL TRANSFER.D - 192
1obo_A_11371obo   A SOASO4 BINDING SITE FOR CHAIN AK - 1137

Clusters included in this Subclass
CLUSTER: AR.1.49