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PDB code:

Information on SUBCLASS 2.4.2

Subclass Accession number: 3713 Subclass: 2.4.2 Type: AR beta-beta link DB: ArchDB95 Image coordinates: Consensus coordinates:

Number of loops: 13 Average sequence ID (%) : 13.1 +/- 26.1 Average RMSD (Å) : 0.800 +/- 0.147 Consensus geometry d (Å): 7 delta (°): 0-45 theta (°): 45-90 rho (°): 225-270

Loops included in this Subclass

Loop	PDB	Chain	Start	End	Sequence	Sec Struct	Ramachandran
1eje_A_41	1eje	A	44	51	APFSFTMP	EEE-SEEE	bxbaxbbx
1i0r_A_23	1i0r	A	27	34	QIANTVFQ	EEES-EEE	bxbaxbbx
1jez_A_15	1jez	A	15	22	LMPSIGFG	EEESBEEE	xbpabbbx
1kfu_L_149	1kfu	L	153	160	VVDDRLPT	EEE--EEE	bbxaxbwb
1ktz_A_78	1ktz	A	78	85	CVPQDLEP	EEE--EEE	xbxaxbbx
1kxr_A_158	1kxr	A	163	170	VVDDLLPT	EEES-EEE	bbxaxbwb
1ln1_A_150	1ln1	A	150	157	IRVKQYKQ	EEE--EEE	xxxabbbb
1mdw_A_148	1mdw	A	153	160	VVDDRLPT	EEES-EEE	bbxaxbwb
1nbw_A_78	1nbw	A	84	91	METITETI	EEE-EEEE	bbxabbbb
1tgj_*_78	1tgj	-	78	85	CVPQDLEP	EEE-SEEE	xbpabbbx
1usc_A_31	1usc	A	35	42	CPAVWNTG	EEESSEEE	bxbaxbbx
2fok_A_258	2fok	A	259	266	EFISHAFK	EEESSEEE	bbbaxbbb
2tgi_*_78	2tgi	-	78	85	CVSQDLEP	EEE-SEEE	xbpabbbw

PDB ligands within a cut-off distance of 6 Å in this subclass

Loop	PDB	Chain	Ligands	Residue
1eje_A_41	1eje	A	NINICKEL (II) ION	N - 42
1eje_A_41	1eje	A	FMNFLAVIN MONONUCLEOTIDE	N - 42
1eje_A_41	1eje	A	NINICKEL (II) ION	A - 43
1eje_A_41	1eje	A	FMNFLAVIN MONONUCLEOTIDE	A - 43
1eje_A_41	1eje	A	NINICKEL (II) ION	A - 44
1eje_A_41	1eje	A	FMNFLAVIN MONONUCLEOTIDE	A - 44
1eje_A_41	1eje	A	FMNFLAVIN MONONUCLEOTIDE	P - 45
1eje_A_41	1eje	A	FMNFLAVIN MONONUCLEOTIDE	F - 46
1eje_A_41	1eje	A	FMNFLAVIN MONONUCLEOTIDE	S - 47
1eje_A_41	1eje	A	FMNFLAVIN MONONUCLEOTIDE	F - 48
1eje_A_41	1eje	A	FMNFLAVIN MONONUCLEOTIDE	T - 49
1i0r_A_23	1i0r	A	FMNFLAVIN MONONUCLEOTIDE	C - 25
1i0r_A_23	1i0r	A	FMNFLAVIN MONONUCLEOTIDE	G - 26
1i0r_A_23	1i0r	A	FMNFLAVIN MONONUCLEOTIDE	Q - 27
1i0r_A_23	1i0r	A	FMNFLAVIN MONONUCLEOTIDE	I - 28
1i0r_A_23	1i0r	A	FMNFLAVIN MONONUCLEOTIDE	A - 29
1i0r_A_23	1i0r	A	FMNFLAVIN MONONUCLEOTIDE	N - 30
1i0r_A_23	1i0r	A	FMNFLAVIN MONONUCLEOTIDE	T - 31
1i0r_A_23	1i0r	A	FMNFLAVIN MONONUCLEOTIDE	V - 32
1ln1_A_150	1ln1	A	DLP1,2-DILINOLEOYL-SN-GLYCERO-3-PHOSPHOCHOLINE	Y - 155
1ln1_A_150	1ln1	A	DLP1,2-DILINOLEOYL-SN-GLYCERO-3-PHOSPHOCHOLINE	Q - 157
1ln1_A_150	1ln1	A	DLP1,2-DILINOLEOYL-SN-GLYCERO-3-PHOSPHOCHOLINE	L - 159
1ln1_A_150	1ln1	A	DLP1,2-DILINOLEOYL-SN-GLYCERO-3-PHOSPHOCHOLINE	A - 160
1ln1_A_150	1ln1	A	DLP1,2-DILINOLEOYL-SN-GLYCERO-3-PHOSPHOCHOLINE	I - 161
1tgj_*_78	1tgj	*	DIO1,4-DIETHYLENE DIOXIDE	I - 88
1tgj_*_78	1tgj	*	DIO1,4-DIETHYLENE DIOXIDE	Y - 90
1usc_A_31	1usc	A	FMNFLAVIN MONONUCLEOTIDE	N - 33
1usc_A_31	1usc	A	FMNFLAVIN MONONUCLEOTIDE	F - 34
1usc_A_31	1usc	A	FMNFLAVIN MONONUCLEOTIDE	C - 35
1usc_A_31	1usc	A	FMNFLAVIN MONONUCLEOTIDE	P - 36
1usc_A_31	1usc	A	FMNFLAVIN MONONUCLEOTIDE	A - 37
1usc_A_31	1usc	A	FMNFLAVIN MONONUCLEOTIDE	V - 38
1usc_A_31	1usc	A	ACTACETATE ION	V - 38
1usc_A_31	1usc	A	FMNFLAVIN MONONUCLEOTIDE	W - 39
1usc_A_31	1usc	A	ACTACETATE ION	W - 39
1usc_A_31	1usc	A	FMNFLAVIN MONONUCLEOTIDE	N - 40

PDB Site Annotated loops in this subclass

Loop	PDB	Chain	Site	Residue
1usc_A_31	1usc	A	AC1FMN BINDING SITE FOR CHAIN A	N - 33
1usc_A_31	1usc	A	AC1FMN BINDING SITE FOR CHAIN A	C - 35
1usc_A_31	1usc	A	AC1FMN BINDING SITE FOR CHAIN A	P - 36
1usc_A_31	1usc	A	AC1FMN BINDING SITE FOR CHAIN A	W - 39

Clusters included in this Subclass

CLUSTER: AR.1.64

CLUSTER: AR.3.48

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