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Information on SUBCLASS 2.5.1
Subclass Accession number: 3716
Subclass: 2.5.1 PSSM
Type: AR beta-beta link
DB: ArchDB95

Image coordinates: Rasmol PDB Jmol PDB
Consensus coordinates: Rasmol PDB Jmol PDB
Number of loops: 16

Average sequence ID (%) : 13.7 +/- 17.9
Average RMSD (Å) : 0.750 +/- 0.159

Consensus geometry
d (Å): 7 delta (°): 90-135 theta (°): 90-135 rho (°): 90-135
Consensus Sequence: XpcXXh
(φψ)-conformation: bplpbb
Pattern: [giklmv]xx[aekqrst][degn]xxx[dgnstv][gilpv]
Conservation:0.320-0.017-1.1350.5752.214-0.889-0.4960.0470.447-1.067
Loops included in this Subclass
LoopPDBChainStartEndSequenceSec StructRamachandran
1czf_A_901czf   A92101MSGEHITVTGEEEES-EEEEbbeblxbbbb
1dgw_A_1261dgw   A131140KLDQGDAIKIEEETT-EEEExxbpgxbbxb
1dzr_A_481dzr   A5362KSKKNVLRGLEEETTBEEEEbbxpvxbbev
1ee6_A_1411ee6   A143152MNVENCNISREEEES-EEEEbbbblbbbbl
1ep0_A_491ep0   A5463MSVRGVLRGLEEETTBEEEEbbxpvxbbew
1fi2_A_1181fi2   A122131VVRAGETFVIEEETT-EEEExbbpvxbbbb
1hg8_A_881hg8   A9099ISGSNITITGEEEES-EEEEbbeblxbbbb
1ia5_A_671ia5   A6978VSGSDLTITGEEEES-EEEEbbeblxbbbb
1juh_A_941juh   A97106VLSSGDYGSVEEETT-EEEEbxbpvxbbbb
1kj1_A_91kj1   A918GLYAGQSLDVEEETT-EEEEbbxpvxbbbb
1l0s_A_361l0s   A3644.TCTGSRFDG.EEES-EEEE.bbblbbbbv
1m8n_A_671m8n   A6775.TCTGSQYNG.EEES-EEEE.bbblbbbbv
1od5_A_3681od5   A373382VLYRNGIYSPEE-TT-EEEEbbxpvxbxpp
1rtv_A_471rtv   A5261RSARGVLRGLEEETTBEEEEbbxpvxbxbv
1tyv_*_4411tyv   -443452MDGKGMYVSNEEEES-EEEEbbebvxbbbl
1tyv_*_4631tyv   -465474LLTHESVFTNEEEES-EEEEbabblbbbbl
PDB ligands within a cut-off distance of 6 Å in this subclass
LoopPDBChainLigandsResidue
1czf_A_901czf   A     ZNZINC ION E - 95
1czf_A_901czf   A     ZNZINC ION H - 96
1dzr_A_481dzr   A     GOLGLYCEROL L - 59
1dzr_A_481dzr   A     GOLGLYCEROL R - 60
1dzr_A_481dzr   A     GOLGLYCEROL G - 61
1dzr_A_481dzr   A     GOLGLYCEROL H - 63
1fi2_A_1181fi2   A     MNMANGANESE (II) ION I - 131
1hg8_A_881hg8   A     NAGN-ACETYL-D-GLUCOSAMINE S - 93
1hg8_A_881hg8   A     NAGN-ACETYL-D-GLUCOSAMINE N - 94
1hg8_A_881hg8   A     NAGN-ACETYL-D-GLUCOSAMINE T - 96
1juh_A_941juh   A     NAGN-ACETYL-D-GLUCOSAMINE V - 97
1juh_A_941juh   A     CUCOPPER (II) ION V - 106
1l0s_A_361l0s   A     TYI3,5-DIIODOTYROSINE C - 37
1l0s_A_361l0s   A     TYI3,5-DIIODOTYROSINE S - 40
1l0s_A_361l0s   A     TYI3,5-DIIODOTYROSINE R - 41
1l0s_A_361l0s   A     CDCADMIUM ION R - 41
1l0s_A_361l0s   A     TYI3,5-DIIODOTYROSINE F - 42
1l0s_A_361l0s   A     CDCADMIUM ION F - 42
1l0s_A_361l0s   A     TYI3,5-DIIODOTYROSINE D - 43
1od5_A_3681od5   A     MGMAGNESIUM ION Q - 370
1od5_A_3681od5   A     MGMAGNESIUM ION V - 372
1od5_A_3681od5   A     MGMAGNESIUM ION Y - 380
1od5_A_3681od5   A     MGMAGNESIUM ION H - 383
1od5_A_3681od5   A     MGMAGNESIUM ION N - 385
1rtv_A_471rtv   A     TARD(-)-TARTARIC ACID R - 59
1rtv_A_471rtv   A     TARD(-)-TARTARIC ACID H - 62
1rtv_A_471rtv   A     TARD(-)-TARTARIC ACID Q - 64
PDB Site Annotated loops in this subclass
LoopPDBChainSiteResidue
1od5_A_3681od5   A AC4MG BINDING SITE FOR CHAIN BH - 383

Clusters included in this Subclass
CLUSTER: AR.2.62
CLUSTER: AR.3.39
CLUSTER: AR.4.143