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PDB code:

Information on SUBCLASS 2.5.1

Subclass Accession number: 3716 Subclass: 2.5.1 Type: AR beta-beta link DB: ArchDB95 Image coordinates: Consensus coordinates:

Number of loops: 16 Average sequence ID (%) : 13.7 +/- 17.9 Average RMSD (Å) : 0.750 +/- 0.159 Consensus geometry d (Å): 7 delta (°): 90-135 theta (°): 90-135 rho (°): 90-135

Loops included in this Subclass

Loop	PDB	Chain	Start	End	Sequence	Sec Struct	Ramachandran
1czf_A_90	1czf	A	92	101	MSGEHITVTG	EEEES-EEEE	bbeblxbbbb
1dgw_A_126	1dgw	A	131	140	KLDQGDAIKI	EEETT-EEEE	xxbpgxbbxb
1dzr_A_48	1dzr	A	53	62	KSKKNVLRGL	EEETTBEEEE	bbxpvxbbev
1ee6_A_141	1ee6	A	143	152	MNVENCNISR	EEEES-EEEE	bbbblbbbbl
1ep0_A_49	1ep0	A	54	63	MSVRGVLRGL	EEETTBEEEE	bbxpvxbbew
1fi2_A_118	1fi2	A	122	131	VVRAGETFVI	EEETT-EEEE	xbbpvxbbbb
1hg8_A_88	1hg8	A	90	99	ISGSNITITG	EEEES-EEEE	bbeblxbbbb
1ia5_A_67	1ia5	A	69	78	VSGSDLTITG	EEEES-EEEE	bbeblxbbbb
1juh_A_94	1juh	A	97	106	VLSSGDYGSV	EEETT-EEEE	bxbpvxbbbb
1kj1_A_9	1kj1	A	9	18	GLYAGQSLDV	EEETT-EEEE	bbxpvxbbbb
1l0s_A_36	1l0s	A	36	44	.TCTGSRFDG	.EEES-EEEE	.bbblbbbbv
1m8n_A_67	1m8n	A	67	75	.TCTGSQYNG	.EEES-EEEE	.bbblbbbbv
1od5_A_368	1od5	A	373	382	VLYRNGIYSP	EE-TT-EEEE	bbxpvxbxpp
1rtv_A_47	1rtv	A	52	61	RSARGVLRGL	EEETTBEEEE	bbxpvxbxbv
1tyv_*_441	1tyv	-	443	452	MDGKGMYVSN	EEEES-EEEE	bbebvxbbbl
1tyv_*_463	1tyv	-	465	474	LLTHESVFTN	EEEES-EEEE	babblbbbbl

PDB ligands within a cut-off distance of 6 Å in this subclass

Loop	PDB	Chain	Ligands	Residue
1czf_A_90	1czf	A	ZNZINC ION	E - 95
1czf_A_90	1czf	A	ZNZINC ION	H - 96
1dzr_A_48	1dzr	A	GOLGLYCEROL	L - 59
1dzr_A_48	1dzr	A	GOLGLYCEROL	R - 60
1dzr_A_48	1dzr	A	GOLGLYCEROL	G - 61
1dzr_A_48	1dzr	A	GOLGLYCEROL	H - 63
1fi2_A_118	1fi2	A	MNMANGANESE (II) ION	I - 131
1hg8_A_88	1hg8	A	NAGN-ACETYL-D-GLUCOSAMINE	S - 93
1hg8_A_88	1hg8	A	NAGN-ACETYL-D-GLUCOSAMINE	N - 94
1hg8_A_88	1hg8	A	NAGN-ACETYL-D-GLUCOSAMINE	T - 96
1juh_A_94	1juh	A	NAGN-ACETYL-D-GLUCOSAMINE	V - 97
1juh_A_94	1juh	A	CUCOPPER (II) ION	V - 106
1l0s_A_36	1l0s	A	TYI3,5-DIIODOTYROSINE	C - 37
1l0s_A_36	1l0s	A	TYI3,5-DIIODOTYROSINE	S - 40
1l0s_A_36	1l0s	A	TYI3,5-DIIODOTYROSINE	R - 41
1l0s_A_36	1l0s	A	CDCADMIUM ION	R - 41
1l0s_A_36	1l0s	A	TYI3,5-DIIODOTYROSINE	F - 42
1l0s_A_36	1l0s	A	CDCADMIUM ION	F - 42
1l0s_A_36	1l0s	A	TYI3,5-DIIODOTYROSINE	D - 43
1od5_A_368	1od5	A	MGMAGNESIUM ION	Q - 370
1od5_A_368	1od5	A	MGMAGNESIUM ION	V - 372
1od5_A_368	1od5	A	MGMAGNESIUM ION	Y - 380
1od5_A_368	1od5	A	MGMAGNESIUM ION	H - 383
1od5_A_368	1od5	A	MGMAGNESIUM ION	N - 385
1rtv_A_47	1rtv	A	TARD(-)-TARTARIC ACID	R - 59
1rtv_A_47	1rtv	A	TARD(-)-TARTARIC ACID	H - 62
1rtv_A_47	1rtv	A	TARD(-)-TARTARIC ACID	Q - 64

PDB Site Annotated loops in this subclass

Loop	PDB	Chain	Site	Residue
1od5_A_368	1od5	A	AC4MG BINDING SITE FOR CHAIN B	H - 383

Clusters included in this Subclass

CLUSTER: AR.2.62

CLUSTER: AR.3.39

CLUSTER: AR.4.143

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