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Information on SUBCLASS 2.5.5
Subclass Accession number: 3720
Subclass: 2.5.5 PSSM
Type: AR beta-beta link
DB: ArchDB95

Image coordinates: Rasmol PDB Jmol PDB
Consensus coordinates: Rasmol PDB Jmol PDB

Conserved Annotation
GO : GO:0004553 (>75 %)  GO:0004650 (>75 %)  GO:0016798 (>75 %)  
SCOP : 51125 (>75 %)  51126 (>75 %)  51137 (>75 %)  
Number of loops: 3

Average sequence ID (%) : 8.3 +/- 12.4
Average RMSD (Å) : 0.700 +/- 0.300

Consensus geometry
d (Å): 7 delta (°): 0-45 theta (°): 45-90 rho (°): 90-135
Consensus Sequence: hpcXph
(φψ)-conformation: bblpbb
Pattern: [AIV]x[NPV][DQT][ADG][ANT][HN][ILV][HRT][FL][DEN][DGN]x[QT][CIV][DS]
Conservation:-0.023-1.524-1.417-0.452-0.666-0.5592.1190.835-0.4520.6010.7280.192-1.3090.4500.2991.178
Loops included in this Subclass
LoopPDBChainStartEndSequenceSec StructRamachandran
1k5c_A_1221k5c   A124139VGPTDAHLTLDGITVDEEEEEEEEEEES-EEEbewbabxbbbbvxbbb
1k5c_A_1761k5c   A177192AINDGNNIRFENNQCSEEEEEEEEEEES-EEEbxabebvbbbblbbbb
1nhc_A_1581nhc   A158173ISVQATNVHLNDFTIDEEEEEEEEEEES-EEEbbbbbblbbbblxbbb
PDB ligands within a cut-off distance of 6 Å in this subclass
LoopPDBChainLigandsResidue
1k5c_A_1221k5c   A     GOLGLYCEROL P - 126
1k5c_A_1221k5c   A     NAGN-ACETYL-D-GLUCOSAMINE T - 127
1k5c_A_1221k5c   A     GOLGLYCEROL T - 127
1k5c_A_1221k5c   A     NAGN-ACETYL-D-GLUCOSAMINE D - 128
1k5c_A_1221k5c   A     GOLGLYCEROL D - 128
1k5c_A_1221k5c   A     NAGN-ACETYL-D-GLUCOSAMINE A - 129
1k5c_A_1221k5c   A     NAGN-ACETYL-D-GLUCOSAMINE H - 130
1k5c_A_1761k5c   A     NAGN-ACETYL-D-GLUCOSAMINE N - 182
1k5c_A_1761k5c   A     NAGN-ACETYL-D-GLUCOSAMINE N - 183
1nhc_A_1581nhc   A     GOLGLYCEROL Q - 161

Clusters included in this Subclass
CLUSTER: AR.1.72