ArchDB - Biological DataBase of Protein Loops

Information on SUBCLASS 2.6.1

Subclass Accession number: 3721
Subclass: 2.6.1

Type: AR beta-beta link
DB: ArchDB95

Image coordinates:

Consensus coordinates:

Number of loops: 23

Average sequence ID (%) : 13.4 +/- 16.6
Average RMSD (Å) : 0.570 +/- 0.284

Consensus geometry

d (Å): 11

delta (°): 45-90

theta (°): 90-135

rho (°): 0-45

Consensus Sequence:	hXXcXX
(φψ)-conformation:	bbplbb

Pattern:	[FILMVWY]	x	[fglptv]	[degknrs]	x	x	[ailpvwy]	x	x
Conservation:	1.861	-0.148	-0.935	1.324	-0.113	-1.053	0.117	-0.213	-0.840

Loops included in this Subclass

Loop	PDB	Chain	Start	End	Sequence	Sec Struct	Ramachandran
1aog_A_249	1aog	A	250	258	ILTKENPAK	EEES--EEE	bbxlbbxab
1b37_A_231	1b37	A	231	239	LQLNKVVRE	EESS--EEE	bbxvbxxab
1d7y_A_203	1d7y	A	204	212	LRFERSVTG	EEES--EEE	xbxvbbxae
1d7y_A_75	1d7y	A	76	84	WLLGVTAQS	EEET--EEE	bxxvbbxae
1fec_A_246	1fec	A	248	256	VRTHENPAK	EEET--EEE	xbxlbbxab
1fl2_A_282	1fl2	A	284	292	VIDSQSASK	EE-S--EEE	xbbvbbxab
1g97_A_308	1g97	A	308	315	VITNSMIE.	EE-S-EEE.	bbxlbbbb.
1ges_A_224	1ges	A	225	233	LHTNAIPKA	EE-S--EEE	xbxlbbwab
1gv4_A_223	1gv4	A	226	234	VLTGKKVVH	EEES--EEE	bbxvbbxab
1h54_A_54	1h54	A	55	63	YLGGVWYPD	EETT--EEE	bbpvxbbwb
1jmk_C_100	1jmk	C	104	111	IMVDSYKK.	EEES--EE.	bbblbbxx.
1kdg_A_420	1kdg	A	422	430	FKTNVMVSN	EE-S--EEE	bbxlbbxab
1m6i_A_224	1m6i	A	227	235	VLTGKKVVQ	EEET--EEE	bbxvbbxab
1m6i_A_362	1m6i	A	363	371	VMPNAIVQS	EE-S--EEE	xbxlbbxab
1mo9_A_152	1mo9	A	152	160	YILNCPAKV	EEESS--EE	bbbvbxxbx
1nhp_*_206	1nhp	-	208	216	IATGETVER	EEES--EEE	bbxvbxxab
1p30_A_857	1p30	A	864	872	LCDRTLWRI	EETT--EEE	bbxlbbxbb
1pj5_A_167	1pj5	A	168	176	YRGSTTVTG	EE-S--EEE	bbxlbbxab
1ps9_A_589	1ps9	A	590	598	MIPGVSYQK	EE-S-EEEE	bbxvxbxab
1q1r_A_207	1q1r	A	208	216	IRTGTQVCG	EE-S--EEE	xbxlbbxae
1q1r_A_75	1q1r	A	77	85	LLGGTQVTA	EE-S--EEE	bbxlbxxab
1qcx_A_120	1qcx	A	120	128	VIKGKGLRV	EEES--EEE	bbbvbxbbb
1s3e_A_229	1s3e	A	229	237	VKLERPVIY	EESS--EEE	xbxlbxxab

PDB ligands within a cut-off distance of 6 Å in this subclass

Loop	PDB	Chain	Ligands	Residue
1aog_A_249	1aog	A	MAEMALEIC ACID	E - 254
1aog_A_249	1aog	A	MAEMALEIC ACID	N - 255
1aog_A_249	1aog	A	MAEMALEIC ACID	P - 256
1aog_A_249	1aog	A	MAEMALEIC ACID	A - 257
1aog_A_249	1aog	A	MAEMALEIC ACID	K - 258
1b37_A_231	1b37	A	FADFLAVIN-ADENINE DINUCLEOTIDE	K - 235
1b37_A_231	1b37	A	FADFLAVIN-ADENINE DINUCLEOTIDE	V - 236
1b37_A_231	1b37	A	FADFLAVIN-ADENINE DINUCLEOTIDE	V - 237
1b37_A_231	1b37	A	FADFLAVIN-ADENINE DINUCLEOTIDE	R - 238
1d7y_A_75	1d7y	A	FADFLAVIN-ADENINE DINUCLEOTIDE	V - 80
1d7y_A_75	1d7y	A	FADFLAVIN-ADENINE DINUCLEOTIDE	T - 81
1d7y_A_75	1d7y	A	FADFLAVIN-ADENINE DINUCLEOTIDE	A - 82
1d7y_A_75	1d7y	A	FADFLAVIN-ADENINE DINUCLEOTIDE	Q - 83
1fl2_A_282	1fl2	A	FADFLAVIN-ADENINE DINUCLEOTIDE	Q - 288
1fl2_A_282	1fl2	A	FADFLAVIN-ADENINE DINUCLEOTIDE	S - 289
1fl2_A_282	1fl2	A	FADFLAVIN-ADENINE DINUCLEOTIDE	A - 290
1fl2_A_282	1fl2	A	FADFLAVIN-ADENINE DINUCLEOTIDE	S - 291
1gv4_A_223	1gv4	A	FADFLAVIN-ADENINE DINUCLEOTIDE	K - 230
1gv4_A_223	1gv4	A	FADFLAVIN-ADENINE DINUCLEOTIDE	K - 231
1gv4_A_223	1gv4	A	FADFLAVIN-ADENINE DINUCLEOTIDE	V - 232
1gv4_A_223	1gv4	A	FADFLAVIN-ADENINE DINUCLEOTIDE	V - 233
1kdg_A_420	1kdg	A	MANALPHA-D-MANNOSE	T - 421
1kdg_A_420	1kdg	A	6FA6-HYDROXY-FLAVIN-ADENINE DINUCLEOTIDE	V - 426
1kdg_A_420	1kdg	A	6FA6-HYDROXY-FLAVIN-ADENINE DINUCLEOTIDE	M - 427
1kdg_A_420	1kdg	A	6FA6-HYDROXY-FLAVIN-ADENINE DINUCLEOTIDE	V - 428
1kdg_A_420	1kdg	A	6FA6-HYDROXY-FLAVIN-ADENINE DINUCLEOTIDE	S - 429
1kdg_A_420	1kdg	A	NAGN-ACETYL-D-GLUCOSAMINE	N - 434
1m6i_A_224	1m6i	A	FADFLAVIN-ADENINE DINUCLEOTIDE	K - 232
1m6i_A_224	1m6i	A	FADFLAVIN-ADENINE DINUCLEOTIDE	V - 234
1mo9_A_152	1mo9	A	FADFLAVIN-ADENINE DINUCLEOTIDE	C - 156
1mo9_A_152	1mo9	A	FADFLAVIN-ADENINE DINUCLEOTIDE	P - 157
1mo9_A_152	1mo9	A	FADFLAVIN-ADENINE DINUCLEOTIDE	A - 158
1mo9_A_152	1mo9	A	FADFLAVIN-ADENINE DINUCLEOTIDE	K - 159
1pj5_A_167	1pj5	A	FADFLAVIN-ADENINE DINUCLEOTIDE	T - 172
1pj5_A_167	1pj5	A	FADFLAVIN-ADENINE DINUCLEOTIDE	T - 173
1pj5_A_167	1pj5	A	FADFLAVIN-ADENINE DINUCLEOTIDE	V - 174
1pj5_A_167	1pj5	A	FADFLAVIN-ADENINE DINUCLEOTIDE	T - 175
1ps9_A_589	1ps9	A	NAPNADP NICOTINAMIDE-ADENINE-DINUCLEOTIDE PHOSPHATE	Y - 596
1q1r_A_75	1q1r	A	FADFLAVIN-ADENINE DINUCLEOTIDE	Q - 82
1q1r_A_75	1q1r	A	FADFLAVIN-ADENINE DINUCLEOTIDE	V - 83
1q1r_A_75	1q1r	A	FADFLAVIN-ADENINE DINUCLEOTIDE	T - 84
1s3e_A_229	1s3e	A	FADFLAVIN-ADENINE DINUCLEOTIDE	R - 233
1s3e_A_229	1s3e	A	FADFLAVIN-ADENINE DINUCLEOTIDE	P - 234
1s3e_A_229	1s3e	A	FADFLAVIN-ADENINE DINUCLEOTIDE	V - 235
1s3e_A_229	1s3e	A	FADFLAVIN-ADENINE DINUCLEOTIDE	I - 236

Clusters included in this Subclass

CLUSTER: AR.2.49

CLUSTER: AR.3.25

CLUSTER: AR.4.21