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Information on SUBCLASS 3.1.4
Subclass Accession number: 3746
Subclass: 3.1.4 PSSM
Type: AR beta-beta link
DB: ArchDB95

Image coordinates: Rasmol PDB Jmol PDB
Consensus coordinates: Rasmol PDB Jmol PDB
Number of loops: 32

Average sequence ID (%) : 7.5 +/- 12.1
Average RMSD (Å) : 0.841 +/- 0.245

Consensus geometry
d (Å): 13 delta (°): 45-90 theta (°): 45-90 rho (°): 135-180
Consensus Sequence: XXXXXXX
(φψ)-conformation: bbabpbb
Pattern: xxxxxxxxx
Conservation:-1.000-0.501-0.558-0.291-0.2570.727-0.861-0.4532.194
Loops included in this Subclass
LoopPDBChainStartEndSequenceSec StructRamachandran
1aoz_A_4131aoz   A413421RIGNGVYQFEEE---EEEbxbaxbxbb
1b1c_A_1381b1c   A138145.QRIFELGL.EE-S--EE.bxabpxxb
1cpt_*_3981cpt   -401409VELSGPPRLEEESS--EEbbxabxpbx
1cse_I_621cse   I6269.VVNHVPHV.EE-S--EE.bxabxwbx
1dj7_B_61dj7   B715VRVTSSVVVEEE-S--EEbbxaxxbxb
1f4p_A_1181f4p   A118125.EIVQDGLR.EE-S--EE.bxabpxxb
1ga6_A_1291ga6   A130137INVSLGWC.EEE---EE.bxbabbbp.
1gvp_*_761gvp   -7684LMIDRLRLVEEESS--EExbxabxbbb
1ia9_A_15981ia9   A15991607SWSQLGLCAEE-SS-EEEbxxaxxbxb
1j18_A_4921j18   A494502SWQTIQQSWEE-SS-EEEbbxaxxxbb
1ja1_A_1981ja1   A198205.QRIFELGL.EESS--EE.bxabpxbb
1lfp_A_1961lfp   A201208WKPISTVQ.EEESS-EE.bbxabbbx.
1lop_A_1471lop   A149157DVPKEDVIIEEESS--EEvxpabxxbx
1m44_A_1321m44   A132140LPWHGPTSVEE--S-EEEbxxaxxxbb
1msw_D_5291msw   D529536.NCSLPLAF.EE---EEE.xbaxxxxb
1oa2_A_1911oa2   A191198.YVLSYQFG.EE---EEE.bxabbbbb
1obd_A_301obd   A3441VATDRISA.EE-S--EE.bxxaxbbb.
1ocv_A_641ocv   A6573VELTQEVRAEEE-S--EEbbxabpxbb
1oh0_A_671oh0   A6876ACLTGPVRAEEESS--EEbbxabxxxb
1pv9_A_1751pv9   A175182.KPAFDTII.EESS--EE.bxabxpxb
1q5d_A_3901q5d   A390397.KLKETPVF.EE-S--EE.bxabpxxb
1qd6_C_331qd6   C3340.YPYDTNYL.EE-S--EE.bxaxxbbb
1qhb_A_5051qhb   A505512.QIDQVFEV.EE---EEE.xbabbbbx
1qks_A_2941qks   A294301.YHPEPRVA.EES---EE.xbabxxxF
1uad_C_851uad   C8592.TSTVSFKL.EESS--EE.bbabbbbx
1ug6_A_2781ug6   A281289VNYYAPVRVEEES--EEEbbbabxbbb
1ukf_A_1681ukf   A168175.SLRREPKT.EE-S--EE.bxabxpbb
1ve9_A_2741ve9   A284292PVRPQVRLEEE-SS-EEExpbabxbbb
1xgs_A_471xgs   A4754.KPAFPVNL.EESS--EE.bxabxpxb
2hgs_A_502hgs   A5057.FTLFPSLV.EESS--EE.bxabxxxb
3ull_A_173ull   A2129GRVGQDPVLEEE-S--EEbbxabxpbx
5nul_*_1095nul   -109116.VVVETPLI.EE-S--EE.bxabxpxb
PDB ligands within a cut-off distance of 6 Å in this subclass
LoopPDBChainLigandsResidue
1f4p_A_1181f4p   A     FMNFLAVIN MONONUCLEOTIDE I - 126
1ga6_A_1291ga6   A     ACTACETATE ION V - 132
1ga6_A_1291ga6   A     ACTACETATE ION S - 133
1ga6_A_1291ga6   A     ACTACETATE ION L - 134
1ga6_A_1291ga6   A     ACTACETATE ION G - 135
1ga6_A_1291ga6   A     ACTACETATE ION W - 136
1ia9_A_15981ia9   A     DTT2,3-DIHYDROXY-1,4-DITHIOBUTANE K - 1608
1j18_A_4921j18   A     GLCGLUCOSE W - 495
1j18_A_4921j18   A     GLCGLUCOSE Q - 496
1j18_A_4921j18   A     GLCGLUCOSE T - 497
1j18_A_4921j18   A     GLCGLUCOSE Q - 499
1lfp_A_1961lfp   A     MSESELENOMETHIONINE W - 201
1lfp_A_1961lfp   A     MSESELENOMETHIONINE K - 202
1lfp_A_1961lfp   A     MSESELENOMETHIONINE P - 203
1lop_A_1471lop   A     NIT4-NITROANILINE D - 149
1obd_A_301obd   A     ATPADENOSINE-5'-TRIPHOSPHATE L - 31
1obd_A_301obd   A     ATPADENOSINE-5'-TRIPHOSPHATE F - 33
1oh0_A_671oh0   A     EQUEQUILENIN A - 68
1pv9_A_1751pv9   A     ZNZINC ION F - 178
1qd6_C_331qd6   C     HDS1-HEXADECANOSULFONIC ACID N - 38
1qd6_C_331qd6   C     HDS1-HEXADECANOSULFONIC ACID Y - 39
1qd6_C_331qd6   C     HDS1-HEXADECANOSULFONIC ACID L - 40
1qks_A_2941qks   A     DHEHEME D V - 300
1qks_A_2941qks   A     DHEHEME D A - 301
1qks_A_2941qks   A     DHEHEME D A - 302
1qks_A_2941qks   A     DHEHEME D I - 303
1qks_A_2941qks   A     DHEHEME D L - 304
1ug6_A_2781ug6   A     GOLGLYCEROL N - 282
1ug6_A_2781ug6   A     GOLGLYCEROL Y - 284
1ve9_A_2741ve9   A     FADFLAVIN-ADENINE DINUCLEOTIDE Y - 279
1ve9_A_2741ve9   A     FADFLAVIN-ADENINE DINUCLEOTIDE T - 280
1ve9_A_2741ve9   A     FADFLAVIN-ADENINE DINUCLEOTIDE G - 281
1ve9_A_2741ve9   A     FADFLAVIN-ADENINE DINUCLEOTIDE F - 282
1ve9_A_2741ve9   A     FADFLAVIN-ADENINE DINUCLEOTIDE R - 283
1ve9_A_2741ve9   A     BEZBENZOIC ACID R - 283
1ve9_A_2741ve9   A     FADFLAVIN-ADENINE DINUCLEOTIDE P - 284
1xgs_A_471xgs   A     COCOBALT (II) ION F - 50
5nul_*_1095nul   *     FMNFLAVIN MONONUCLEOTIDE V - 117
5nul_*_1095nul   *     FMNFLAVIN MONONUCLEOTIDE Q - 118
PDB Site Annotated loops in this subclass
LoopPDBChainSiteResidue
1obd_A_301obd   A AC2ATP BINDING SITE FOR CHAIN AL - 31
1obd_A_301obd   A AC2ATP BINDING SITE FOR CHAIN AF - 33

Clusters included in this Subclass
CLUSTER: AR.3.26
CLUSTER: AR.4.22
CLUSTER: AR.5.6