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Information on SUBCLASS 3.1.5
Subclass Accession number: 3747
Subclass: 3.1.5 PSSM
Type: AR beta-beta link
DB: ArchDB95

Image coordinates: Rasmol PDB Jmol PDB
Consensus coordinates: Rasmol PDB Jmol PDB
Number of loops: 27

Average sequence ID (%) : 10.1 +/- 17.9
Average RMSD (Å) : 0.770 +/- 0.222

Consensus geometry
d (Å): 9 delta (°): 45-90 theta (°): 45-90 rho (°): 0-45
Consensus Sequence: XXXXXXX
(φψ)-conformation: bbabpbb
Pattern: xxx[adegnpqst]x[adegnpqs][afilvy]x
Conservation:-0.149-0.417-1.0200.0870.0240.3452.146-1.016
Loops included in this Subclass
LoopPDBChainStartEndSequenceSec StructRamachandran
1a8i_*_811a8i   -8491YLSLEFYMEE-S-EEEbxbabbxa
1bpy_A_1871bpy   A187193.SSGDMDV.EESSEEE.bxabbbb
1edq_A_531edq   A5562KVKNAADVEE-SSEEEbxbabxxb
1fny_A_471fny   A5057ALYAAPFQEEESS-EEbbxabxbx
1g7y_A_451g7y   A4855AFYSSPIQEEESS-EEbbxabxbx
1gpi_A_1971gpi   A197204GTGSYGTCEE-S-EEEbbbabbbb
1gzc_A_481gzc   A5158TLYTKPVHEEESS-EEbbxabxbx
1h6l_A_3311h6l   A334341AQNGENIDEEESS-EEbxbabxbb
1hw6_A_131hw6   A1320SIPQLGYGEEESB-EEbbxabbxx
1i7q_A_3021i7q   A305312GASPESALEEES-EEEebbabpab
1jn3_A_1871jn3   A187193.SSGDMDV.EES-EEE.bbabbbb
1k7h_A_4321k7h   A432438.HDGTDVG.EE-S-EE.xbaxpbx
1mvq_A_1691mvq   A172179ALYYAPVHEEESS-EEbbxaxxbx
1mzr_A_151mzr   A1522VMPQLGLGEEESB-EEbbxabbbx
1o9w_A_531o9w   A5865GKVDLPVVEEE-S-EEbbbaxxxa
1plq_*_1961plq   -197204LEMDQPVDEEESS-EEbbbabxbb
1qnw_A_461qnw   A5057ALYAAPIQEEESS-EEbbxabxbx
1rwr_A_1661rwr   A167174VKLQGAVSEEE-S-EEbbbabxbb
1rwr_A_2401rwr   A241248VRQLGSLSEEE-S-EEbbbaxxbb
1rwz_A_581rwz   A5966YNIDEEKTEEESS-EEbbbabxbb
1rzt_A_4241rzt   A424430.TCGDVDV.EES-EEE.bbabbbb
1s4n_A_2711s4n   A271278YGFTVSIHEEES-EEEbbbaxbbx
1tul_*_241tul   -2734FIIEDEYYEEE-S-EEbxxabpbb
1ukg_A_461ukg   A5057ILFSAQVHEEESS-EEbbxaxxxx
1v6i_A_431v6i   A4653VLYAMPVREEESS-EEbbxaxxbx
1wbf_A_461wbf   A4956ALYAKPVQEEESS-EEbbxabxbx
2rsp_A_732rsp   A7481RKSRDMIEEEESS-EEbbxaxxbx
PDB ligands within a cut-off distance of 6 Å in this subclass
LoopPDBChainLigandsResidue
1a8i_*_811a8i   *     LLP2-LYSINE(3-HYDROXY-2-METHYL-5-PHOSPHONOOXYMETHYL-PYRIDIN-4-YLMETHANE) Y - 90
1bpy_A_1871bpy   A     DCT2',3'-DIDEOXYCYTIDINE 5'-TRIPHOSPHATE S - 187
1bpy_A_1871bpy   A     DCT2',3'-DIDEOXYCYTIDINE 5'-TRIPHOSPHATE S - 188
1bpy_A_1871bpy   A     MGMAGNESIUM ION S - 188
1bpy_A_1871bpy   A     DCT2',3'-DIDEOXYCYTIDINE 5'-TRIPHOSPHATE G - 189
1bpy_A_1871bpy   A     MGMAGNESIUM ION G - 189
1bpy_A_1871bpy   A     DOC2',3'-DIDEOXYCYTIDINE-5'-MONOPHOSPHATE D - 190
1bpy_A_1871bpy   A     DCT2',3'-DIDEOXYCYTIDINE 5'-TRIPHOSPHATE D - 190
1bpy_A_1871bpy   A     MGMAGNESIUM ION D - 190
1bpy_A_1871bpy   A     DCT2',3'-DIDEOXYCYTIDINE 5'-TRIPHOSPHATE M - 191
1bpy_A_1871bpy   A     MGMAGNESIUM ION M - 191
1bpy_A_1871bpy   A     DOC2',3'-DIDEOXYCYTIDINE-5'-MONOPHOSPHATE D - 192
1bpy_A_1871bpy   A     DCT2',3'-DIDEOXYCYTIDINE 5'-TRIPHOSPHATE D - 192
1bpy_A_1871bpy   A     MGMAGNESIUM ION D - 192
1h6l_A_3311h6l   A     CACALCIUM ION Q - 335
1h6l_A_3311h6l   A     CACALCIUM ION N - 336
1h6l_A_3311h6l   A     CACALCIUM ION G - 337
1h6l_A_3311h6l   A     CACALCIUM ION E - 338
1h6l_A_3311h6l   A     CACALCIUM ION N - 339
1h6l_A_3311h6l   A     CACALCIUM ION I - 340
1h6l_A_3311h6l   A     CACALCIUM ION D - 341
1i7q_A_3021i7q   A     BEZBENZOIC ACID P - 308
1i7q_A_3021i7q   A     BEZBENZOIC ACID E - 309
1i7q_A_3021i7q   A     PYRPYRUVIC ACID E - 309
1k7h_A_4321k7h   A     ZNZINC ION H - 432
1ukg_A_461ukg   A     PCAPYROGLUTAMIC ACID F - 52
1ukg_A_461ukg   A     CACALCIUM ION F - 52
1ukg_A_461ukg   A     PCAPYROGLUTAMIC ACID Q - 55
1ukg_A_461ukg   A     CACALCIUM ION Q - 55
1ukg_A_461ukg   A     PCAPYROGLUTAMIC ACID H - 57
1ukg_A_461ukg   A     CACALCIUM ION H - 57
PDB Site Annotated loops in this subclass
LoopPDBChainSiteResidue
1bpy_A_1871bpy   A ACTACTIVE SITE OF NUCLEOTIDYL TRANSFER.D - 190
1bpy_A_1871bpy   A ACTACTIVE SITE OF NUCLEOTIDYL TRANSFER.D - 192
1h6l_A_3311h6l   A AC2STRUCTURAL CA 402 BINDING SITE FOR CHAIN AN - 336
1h6l_A_3311h6l   A AC2STRUCTURAL CA 402 BINDING SITE FOR CHAIN AE - 338
1h6l_A_3311h6l   A AC1STRUCTURAL CA 401 BINDING SITE FOR CHAIN AN - 339
1h6l_A_3311h6l   A AC1STRUCTURAL CA 401 BINDING SITE FOR CHAIN AI - 340
1h6l_A_3311h6l   A AC1STRUCTURAL CA 401 BINDING SITE FOR CHAIN AD - 341

Clusters included in this Subclass
CLUSTER: AR.2.19