ArchDB - Biological DataBase of Protein Loops

Grup de Recerca en Informàtica Biomèdica

Information on SUBCLASS 3.1.11

Subclass Accession number: 3753
Subclass: 3.1.11

PSSM

Type: AR beta-beta link
DB: ArchDB95

Image coordinates:

Rasmol PDB

Jmol PDB

Consensus coordinates:

Rasmol PDB

Jmol PDB

Number of loops: 8

Average sequence ID (%) : 7.1 +/- 11.6
Average RMSD (Å) : 0.913 +/- 0.210

Consensus geometry

d (Å): 9

delta (°): 45-90

theta (°): 135-180

rho (°): 90-135

Consensus Sequence:	XXXpXXX
(φψ)-conformation:	bbabpbb

Pattern:	x	x	[afikt]	[acgns]	[dqsw]	[ADRST]	[dgpqs]	x	x	x
Conservation:	-1.000	-0.710	0.133	0.454	0.155	1.726	0.305	-1.755	-0.308	-1.000

Loops included in this Subclass

Loop	PDB	Chain	Start	End	Sequence	Sec Struct	Ramachandran
1ewq_A_546	1ewq	A	546	554	.RFGDRLQIR	.EESSS-EEE	.bbbabxbbb
1iil_E_280	1iil	E	280	288	.VYSDAQPHI	.EE-SS--EE	.bbbappxbb
1lur_A_1143	1lur	A	1149	1157	HATCDTPGL.	EEE-SS-EE.	bbbbabpbb.
1n9p_A_261	1n9p	A	261	269	QLFLVSPLT.	EEE-SS-EE.	xxbxabpbx.
1nhc_A_202	1nhc	A	202	211	TVKNQDDCIA	EEESSSEEEE	bbbbabpabb
1nsc_A_170	1nsc	A	172	181	HMAAWSGSAC	EEE-SEEEEE	abxbabbbbb
1rhy_A_108	1rhy	A	114	123	IDISSRPYFM	EE-SS--EEE	bbxbabxbbb
2bat_*_172	2bat	-	174	183	VCIAWSSSSC	EEE-SSEEEE	abxbabbbbb

PDB ligands within a cut-off distance of 6 Å in this subclass

Loop	PDB	Chain	Ligands	Residue
1ewq_A_546	1ewq	A	MSESELENOMETHIONINE	D - 549
1ewq_A_546	1ewq	A	MSESELENOMETHIONINE	R - 550
1ewq_A_546	1ewq	A	MSESELENOMETHIONINE	L - 551
1ewq_A_546	1ewq	A	MSESELENOMETHIONINE	Q - 552
1n9p_A_261	1n9p	A	MSESELENOMETHIONINE	L - 264
1n9p_A_261	1n9p	A	MSESELENOMETHIONINE	T - 269
1nsc_A_170	1nsc	A	SIAO-SIALIC ACID	W - 176
1nsc_A_170	1nsc	A	SIAO-SIALIC ACID	S - 177
1nsc_A_170	1nsc	A	SIAO-SIALIC ACID	G - 178
1rhy_A_108	1rhy	A	HGMERCURY (II) ION	F - 122
1rhy_A_108	1rhy	A	EMCETHYL MERCURY ION	F - 122
1rhy_A_108	1rhy	A	HGMERCURY (II) ION	M - 123
1rhy_A_108	1rhy	A	EMCETHYL MERCURY ION	M - 123
1rhy_A_108	1rhy	A	HGMERCURY (II) ION	C - 124
1rhy_A_108	1rhy	A	EMCETHYL MERCURY ION	C - 124
1rhy_A_108	1rhy	A	HGMERCURY (II) ION	H - 125
1rhy_A_108	1rhy	A	EMCETHYL MERCURY ION	H - 125
2bat_*_172	2bat	*	SIAO-SIALIC ACID	W - 178
2bat_*_172	2bat	*	SIAO-SIALIC ACID	S - 179

Clusters included in this Subclass

CLUSTER: AR.3.257

CLUSTER: AR.4.92

CLUSTER: AR.5.225