ArchDB - Biological DataBase of Protein Loops

Grup de Recerca en Informàtica Biomèdica

Information on SUBCLASS 3.4.3

Subclass Accession number: 3789
Subclass: 3.4.3

PSSM

Type: AR beta-beta link
DB: ArchDB95

Image coordinates:

Rasmol PDB

Jmol PDB

Consensus coordinates:

Rasmol PDB

Jmol PDB

Number of loops: 12

Average sequence ID (%) : 31.6 +/- 30.6
Average RMSD (Å) : 0.417 +/- 0.241

Consensus geometry

d (Å): 13

delta (°): 0-45

theta (°): 0-45

rho (°): 0-45

Consensus Sequence:	ppXpXXh
(φψ)-conformation:	bbababb

Pattern:	[lmv]	[qst]	[aeq]	x	[dhpqrst]	[akrst]	x	[filmv]	[kst]
Conservation:	1.295	0.707	1.366	-0.773	-0.802	-0.858	-1.297	0.522	-0.160

Loops included in this Subclass

Loop	PDB	Chain	Start	End	Sequence	Sec Struct	Ramachandran
1bz7_A_4	1bz7	A	4	12	MTQITSSLS	EE-S-SEEE	xbbababbx
1cic_A_4	1cic	A	4	12	MTQSHKFMS	EE---SEEE	bbbababbx
1fe8_L_4	1fe8	L	4	12	MTQTTSSLS	EE-S-SEEE	bbbababbb
1feu_A_116	1feu	A	117	125	LQEIHRDIL	EEE--SEEE	xbxababbx
1fnl_A_91	1fnl	A	93	101	LQAPRWVFK	EE-S-SEEE	xbbababbx
1fns_L_4	1fns	L	4	12	MTQSPSSLS	EE-S-SEEE	bbbaxabbx
1fo0_A_3	1fo0	A	3	11	VTQTQTSIS	EE----EEE	bbbaxabbb
1i9e_A_2	1i9e	A	3	11	VTQPDARVT	EE---SEEE	bbbababbb
1kcu_L_4	1kcu	L	4	12	LTQSPKSMS	EE-S-SEEE	bbbapabbb
1mex_L_4	1mex	L	4	12	MTQSQKFMS	EE---SEEE	bbbababbb
1osp_L_4	1osp	L	4	12	MSQSSSSFS	EE---SEEE	bbbababbb
1tcr_A_3	1tcr	A	3	11	VTQPDARVT	EE-S-SEEE	bbbababbb

PDB ligands within a cut-off distance of 6 Å in this subclass

Loop	PDB	Chain	Ligands	Residue
1feu_A_116	1feu	A	CDCADMIUM ION	H - 121
1feu_A_116	1feu	A	CDCADMIUM ION	R - 122
1feu_A_116	1feu	A	CDCADMIUM ION	D - 123
1feu_A_116	1feu	A	CDCADMIUM ION	I - 124
1feu_A_116	1feu	A	CDCADMIUM ION	L - 125
1feu_A_116	1feu	A	MGMAGNESIUM ION	K - 127
1fnl_A_91	1fnl	A	HGMERCURY (II) ION	P - 96

Clusters included in this Subclass

CLUSTER: AR.3.53