ArchDB - Biological DataBase of Protein Loops

Grup de Recerca en Informàtica Biomèdica

Information on SUBCLASS 3.6.2

Subclass Accession number: 3803
Subclass: 3.6.2

PSSM

Type: AR beta-beta link
DB: ArchDB95

Image coordinates:

Rasmol PDB

Jmol PDB

Consensus coordinates:

Rasmol PDB

Jmol PDB

Number of loops: 9

Average sequence ID (%) : 15.8 +/- 17.3
Average RMSD (Å) : 0.689 +/- 0.237

Consensus geometry

d (Å): 9

delta (°): 45-90

theta (°): 135-180

rho (°): 90-135

Consensus Sequence:	XhXXcpX
(φψ)-conformation:	bbpplbp

Pattern:	x	[ILTV]	[egnpq]	[adpsv]	[agn]	x	[dptv]	[afivy]	x	[ilt]
Conservation:	-0.765	1.680	-0.584	-0.756	1.414	-0.734	0.180	-0.034	-1.208	0.807

Loops included in this Subclass

Loop	PDB	Chain	Start	End	Sequence	Sec Struct	Ramachandran
1dgw_A_137	1dgw	A	139	148	KIQAGTPFYL	EE-TT--EEE	xbppvxwbbb
1gtt_A_257	1gtt	A	257	266	LTGDNQTSVR	EE-TTEEEEE	xbxxlbbbxx
1hfu_A_374	1hfu	A	376	385	ELPRNQVVEL	EE-SS-EEEE	xbxxlbxbbb
1j1l_A_210	1j1l	A	211	220	KIEPHHTAVL	EE-TTEEEEE	xbxpvbbbxx
1kv7_A_280	1kv7	A	286	295	EVNDNKPFDL	EE-TT--EEE	xbbpvbwbbx
1kya_A_371	1kya	A	373	382	SLPSNADIEI	EE-SS-EEEE	xbxxlbxbbb
1od5_A_121	1od5	A	124	133	VIPPGVPYWT	EE-TT--EEE	bbxpvbwbbb
1ule_A_2	1ule	A	4	13	HLFVNNQVKL	EE-TTEEEEE	bxxxlbbbxx
2phl_A_299	2phl	A	301	310	VIPAAYPVAI	EE-TT--EEE	xbxxvxwbbb

PDB ligands within a cut-off distance of 6 Å in this subclass

Loop	PDB	Chain	Ligands	Residue
1hfu_A_374	1hfu	A	NAGN-ACETYL-D-GLUCOSAMINE	Y - 375
1kya_A_371	1kya	A	NAGN-ACETYL-D-GLUCOSAMINE	E - 381
1kya_A_371	1kya	A	NAGN-ACETYL-D-GLUCOSAMINE	S - 383
1od5_A_121	1od5	A	CO3CARBONATE ION	Y - 131
1od5_A_121	1od5	A	CO3CARBONATE ION	W - 132
1od5_A_121	1od5	A	CO3CARBONATE ION	T - 133

PDB Site Annotated loops in this subclass

Loop	PDB	Chain	Site	Residue
1od5_A_121	1od5	A	AC1CO3 BINDING SITE FOR CHAIN A	Y - 131
1od5_A_121	1od5	A	AC1CO3 BINDING SITE FOR CHAIN A	T - 133

Clusters included in this Subclass

CLUSTER: AR.4.72

CLUSTER: AR.6.117