ArchDB - Biological DataBase of Protein Loops

Information on SUBCLASS 3.10.1

Subclass Accession number: 3832
Subclass: 3.10.1

Type: AR beta-beta link
DB: ArchDB95

Image coordinates:

Consensus coordinates:

Number of loops: 13

Average sequence ID (%) : 10.9 +/- 12.9
Average RMSD (Å) : 0.785 +/- 0.234

Consensus geometry

d (Å): 11

delta (°): 45-90

theta (°): 135-180

rho (°): 90-135

Consensus Sequence:	XhXXpXX
(φψ)-conformation:	bbpaabb

Pattern:	x	x	[cdenqst]	[afilmv]	[dhpqt]	x	[adrs]	x	x	[afgilvy]	x	x
Conservation:	-0.317	-0.321	-0.595	0.794	0.854	-1.182	2.182	-0.065	-0.734	-0.616	-1.000	-1.000

Loops included in this Subclass

Loop	PDB	Chain	Start	End	Sequence	Sec Struct	Ramachandran
1at0_*_322	1at0	-	322	333	VLTVTPAHLVSV	EEEE-TT-EEEE	bbbbxaaxxbxb
1b35_B_119	1b35	B	131	142	QVNSQPFQQGRL	EEE--TT-EEEE	bbbbbaabbebb
1hup_*_211	1hup	-	211	222	WNDVPCSTSHLA	EEEE-TTSEEEE	bbxbxaaxbbxx
1jj2_E_2	1jj2	E	4	15	ELEIPEDVDAEQ	EEE--TT-EEEE	bbxxxaabbbbb
1kws_A_188	1kws	A	190	199	VYFADDDNTY..	EEE--TTSEE..	bbxbxaaxbb..
1lzj_A_206	1lzj	A	207	216	LVCVDVDMEF..	EEEE-SSEEE..	bbbbxaabbx..
1n7v_A_189	1n7v	A	189	199	.ASFIFDRPVTE	.EE-BSSS-EEE	.bbxbaabxxbb
1nul_A_124	1nul	A	126	136	VVDIPQDTWIE.	EEE--TT-EEE.	abxbxaaxxbb.
1o1y_A_140	1o1y	A	141	152	TFDLPRRATRVF	EE---TT-EEEE	bbxxxaaxxxab
1o7q_A_220	1o7q	A	221	230	LFCMDVDQVF..	EEEE-SSEEE..	bbbbxaabbx..
1qqr_A_233	1qqr	A	233	243	.TILPMDQEFTY	.EE--SSS--EE	.bxxpaabxbbb
1rl6_A_30	1rl6	A	33	44	TRTFHPDMTITV	EEE--TT-EEEE	bbbbpaaxbbbx
1un7_A_45	1un7	A	46	57	EIQAPADSVLLP	EEE--TT-EEEE	bbxxxaaxbxbx

PDB ligands within a cut-off distance of 6 Å in this subclass

Loop	PDB	Chain	Ligands	Residue
1at0_*_322	1at0	*	MSESELENOMETHIONINE	S - 332
1hup_*_211	1hup	*	CACALCIUM ION	N - 212
1hup_*_211	1hup	*	CACALCIUM ION	D - 213
1hup_*_211	1hup	*	CACALCIUM ION	V - 214
1kws_A_188	1kws	A	UGAURIDINE-5'-DIPHOSPHATE-GLUCURONIC ACID	A - 193
1kws_A_188	1kws	A	MNMANGANESE (II) ION	D - 194
1kws_A_188	1kws	A	UGAURIDINE-5'-DIPHOSPHATE-GLUCURONIC ACID	D - 194
1kws_A_188	1kws	A	MNMANGANESE (II) ION	D - 195
1kws_A_188	1kws	A	UGAURIDINE-5'-DIPHOSPHATE-GLUCURONIC ACID	D - 195
1kws_A_188	1kws	A	MNMANGANESE (II) ION	D - 196
1kws_A_188	1kws	A	UGAURIDINE-5'-DIPHOSPHATE-GLUCURONIC ACID	D - 196
1kws_A_188	1kws	A	MNMANGANESE (II) ION	N - 197
1kws_A_188	1kws	A	UGAURIDINE-5'-DIPHOSPHATE-GLUCURONIC ACID	N - 197
1lzj_A_206	1lzj	A	HGMERCURY (II) ION	L - 207
1lzj_A_206	1lzj	A	HGMERCURY (II) ION	V - 208
1lzj_A_206	1lzj	A	HGMERCURY (II) ION	C - 209
1lzj_A_206	1lzj	A	HGMERCURY (II) ION	V - 210
1lzj_A_206	1lzj	A	UDPURIDINE-5'-DIPHOSPHATE	V - 210
1lzj_A_206	1lzj	A	HGMERCURY (II) ION	D - 211
1lzj_A_206	1lzj	A	MNMANGANESE (II) ION	D - 211
1lzj_A_206	1lzj	A	UDPURIDINE-5'-DIPHOSPHATE	D - 211
1lzj_A_206	1lzj	A	MNMANGANESE (II) ION	V - 212
1lzj_A_206	1lzj	A	UDPURIDINE-5'-DIPHOSPHATE	V - 212
1lzj_A_206	1lzj	A	MNMANGANESE (II) ION	D - 213
1lzj_A_206	1lzj	A	UDPURIDINE-5'-DIPHOSPHATE	D - 213
1lzj_A_206	1lzj	A	MNMANGANESE (II) ION	M - 214
1lzj_A_206	1lzj	A	UDPURIDINE-5'-DIPHOSPHATE	M - 214
1o1y_A_140	1o1y	A	MSESELENOMETHIONINE	D - 140
1o1y_A_140	1o1y	A	OCSCYSTEINESULFONIC ACID	F - 142
1o7q_A_220	1o7q	A	UDPURIDINE-5'-DIPHOSPHATE	M - 224
1o7q_A_220	1o7q	A	MNMANGANESE (II) ION	D - 225
1o7q_A_220	1o7q	A	GALD-GALACTOSE	D - 225
1o7q_A_220	1o7q	A	UDPURIDINE-5'-DIPHOSPHATE	D - 225
1o7q_A_220	1o7q	A	MNMANGANESE (II) ION	V - 226
1o7q_A_220	1o7q	A	UDPURIDINE-5'-DIPHOSPHATE	V - 226
1o7q_A_220	1o7q	A	MNMANGANESE (II) ION	D - 227
1o7q_A_220	1o7q	A	UDPURIDINE-5'-DIPHOSPHATE	D - 227
1o7q_A_220	1o7q	A	MNMANGANESE (II) ION	Q - 228
1o7q_A_220	1o7q	A	UDPURIDINE-5'-DIPHOSPHATE	Q - 228
1o7q_A_220	1o7q	A	GOLGLYCEROL	V - 229

PDB Site Annotated loops in this subclass

Loop	PDB	Chain	Site	Residue
1at0_*_322	1at0	*	ACTAUTOPROCESSING ACTIVE SITE.	T - 326
1at0_*_322	1at0	*	ACTAUTOPROCESSING ACTIVE SITE.	H - 329
1o7q_A_220	1o7q	A	AC3MN BINDING SITE FOR CHAIN A	D - 225
1o7q_A_220	1o7q	A	AC3MN BINDING SITE FOR CHAIN A	D - 227

Clusters included in this Subclass