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PDB code:

Information on SUBCLASS 4.2.5

Subclass Accession number: 3880 Subclass: 4.2.5 Type: AR beta-beta link DB: ArchDB95 Image coordinates: Consensus coordinates:

Number of loops: 9 Average sequence ID (%) : 13.9 +/- 15.3 Average RMSD (Å) : 0.744 +/- 0.300 Consensus geometry d (Å): 5 delta (°): 45-90 theta (°): 90-135 rho (°): 90-135

Loops included in this Subclass

Loop	PDB	Chain	Start	End	Sequence	Sec Struct	Ramachandran
1du3_A_83	1du3	A	84	92	CQCEEGTFR	EEE-TT-EE	bbxppgbbb
1e43_A_467	1e43	A	470	478	FHVNGGSVS	EEE-TT-EE	xbbxxlbbb
1ee6_A_9	1ee6	A	9	17	IRVPAGQTF	EEE-TT-EE	xxbxpvxbb
1j0h_A_572	1j0h	A	573	581	TSLPPYGFV	EEE-TT-EE	bbbxplxbb
1o4t_A_44	1o4t	A	50	58	MKLPPGSSV	EEE-TT-EE	bbbppvxbx
1o5u_A_65	1o5u	A	66	74	VTFPKGLRC	EEE-TT-EE	bbbxpvxbb
1od5_A_421	1od5	A	422	430	LVVPQNFVV	EEE-TT-EE	bxbxpvxxb
1ok3_A_28	1ok3	A	31	39	YKCEESFVK	EEE-TT-EE	bbxxpvbbx
1uas_A_344	1uas	A	347	355	ASVAPHDCK	EEE-TT-EE	bxbxpvxbb

PDB ligands within a cut-off distance of 6 Å in this subclass

Loop	PDB	Chain	Ligands	Residue
1e43_A_467	1e43	A	CACALCIUM ION	Q - 482
1o4t_A_44	1o4t	A	OXLOXALATE ION	R - 45
1o4t_A_44	1o4t	A	OXLOXALATE ION	L - 46
1o4t_A_44	1o4t	A	OXLOXALATE ION	M - 50
1o4t_A_44	1o4t	A	MNMANGANESE (II) ION	V - 58
1o4t_A_44	1o4t	A	OXLOXALATE ION	V - 58
1o4t_A_44	1o4t	A	MNMANGANESE (II) ION	H - 61
1o4t_A_44	1o4t	A	OXLOXALATE ION	H - 61
1od5_A_421	1od5	A	MGMAGNESIUM ION	V - 430
1od5_A_421	1od5	A	MGMAGNESIUM ION	E - 432
1od5_A_421	1od5	A	MGMAGNESIUM ION	Y - 441
1od5_A_421	1od5	A	MGMAGNESIUM ION	V - 443
1od5_A_421	1od5	A	MGMAGNESIUM ION	K - 445
1uas_A_344	1uas	A	GOLGLYCEROL	P - 351
1uas_A_344	1uas	A	GOLGLYCEROL	H - 352

PDB Site Annotated loops in this subclass

Loop	PDB	Chain	Site	Residue
1od5_A_421	1od5	A	AC4MG BINDING SITE FOR CHAIN B	E - 432
1od5_A_421	1od5	A	AC4MG BINDING SITE FOR CHAIN B	Y - 441

Clusters included in this Subclass

CLUSTER: AR.3.109

CLUSTER: AR.4.157

CLUSTER: AR.5.100

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