ArchDB - Biological DataBase of Protein Loops

Information on SUBCLASS 4.3.1

Subclass Accession number: 3886
Subclass: 4.3.1

Type: AR beta-beta link
DB: ArchDB95

Image coordinates:

Consensus coordinates:

Number of loops: 42

Average sequence ID (%) : 24.1 +/- 22.0
Average RMSD (Å) : 0.550 +/- 0.190

Consensus geometry

d (Å): 11

delta (°): 45-90

theta (°): 135-180

rho (°): 225-270

Consensus Sequence:	hphXpXGX
(φψ)-conformation:	bbpabpeb

Pattern:	x	[acfilvwy]	[akqrt]	[acfilmptv]	[deknpqrst]	[adeknqrt]	[adepst]	[G]	[ailmptv]	[fhivwy]	x
Conservation:	-0.543	-0.351	-0.092	-0.341	-0.422	-0.235	-0.219	2.931	-0.298	0.236	-0.666

Loops included in this Subclass

Loop	PDB	Chain	Start	End	Sequence	Sec Struct	Ramachandran
1adw_A_64	1adw	A	65	75	TLTVTEPGLYG	EEEE-S-EEEE	bbbxaxxexbx
1ag6_*_69	1ag6	-	71	81	KVTLTEKGTYK	EEE--S-EEEE	bbbbaxxebbx
1aoz_A_489	1aoz	A	494	504	RFVADNPGVWA	EEE--S-EEEE	bbxxabpebbx
1aoz_A_88	1aoz	A	92	102	NFTVDNPGTFF	EEE--S-EEEE	bbbbabxexbb
1bdo_*_81	1bdo	-	82	92	IVRSPMVGTFY	EEE-SSSEEEE	bxbxabxebxb
1bqk_*_64	1bqk	-	65	75	KVTFTAPGVYG	EEE--S-EEEE	xbxxaxxexbx
1bxu_A_69	1bxu	A	71	81	EATFSEPGTYT	EEE--S-EEEE	bbbxabxebbb
1byp_A_69	1byp	A	71	81	SVTLTEKGTYK	EEEE-S-EEEE	bbbbaxxebbb
1cwv_A_658	1cwv	A	662	672	PLTSTTLGVAT	EEE-SS-EEEE	xbbbabxebbb
1ex0_A_688	1ex0	A	694	704	VCRPWVSGHRK	EE--SS-EEEE	xbbxabxexbb
1f00_I_717	1f00	I	721	730	TLTSTTPGKS.	EEE-SS-EEE.	bbbbabxexb.
1f1s_A_949	1f1s	A	949	958	.FKMNKAGLYL	.EEE-S-EEEE	.bbbabxebbb
1fwx_A_544	1fwx	A	548	558	TFVAANPGVYW	EEE--S-EEEE	bbbxabxexbb
1gw0_A_121	1gw0	A	126	136	RWRARQYGTSW	EEE--S-EEEE	bbxxabbebbb
1gyc_A_436	1gyc	A	440	450	RFQTDNPGPWF	EEE--S-EEEE	bbbxabpewbx
1hfu_A_435	1hfu	A	439	449	RFVTDNPGPWF	EEE--S-EEEE	bbbxabpewbx
1iby_A_78	1iby	A	82	92	SFTADKAGAFT	EEE--S-EEEE	bbbxabxebbx
1id2_A_77	1id2	A	80	90	AITFNEAGSYD	EEEE-S-EEEE	bbxbabpebbx
1itw_A_186	1itw	A	187	197	AALIGAPGSVK	EEE--SSEEEE	bbbxabpebbb
1iuz_*_69	1iuz	-	71	81	VRKLSTPGVYG	EEE--S-EEEE	bbbbaxwebbx
1j9q_A_287	1j9q	A	292	302	FYTFQQPGIYA	EEE--S-EEEE	bbbxabxexbb
1jer_*_75	1jer	-	76	86	IERLDELGMHY	EEE--SSEEEE	bbxbabxexbb
1kbv_A_117	1kbv	A	122	132	SFKALQPGLYI	EEE--S-EEEE	bbxxabxebbx
1kya_A_438	1kya	A	440	450	RFRTDNPGPWF	EEE--S-EEEE	bbbxabpewbx
1l0q_A_352	1l0q	A	352	362	THTYSETGIYT	EE--SS-EEEE	bbbxabxebbb
1m56_B_236	1m56	B	239	249	WFRAEREGIFF	EEE-SS-EEEE	bbbxabxebbb
1n7o_A_851	1n7o	A	851	860	.FQVLKRGVYT	.EEE-SSEEEE	.bbbabpebbb
1nif_*_118	1nif	-	123	133	RFKATKPGVFV	EEE--S-EEEE	bbxxabwebbx
1nif_*_287	1nif	-	292	302	FYTFRQPGVYA	EEE--S-EEEE	bbbxabxexbb
1o6u_A_350	1o6u	A	352	362	TLTCSDPGIYV	EEEE-S-EEEE	bbxxaxxebxb
1oe1_A_112	1oe1	A	117	127	RFKADRSGTFV	EEE--S-EEEE	bbxxabxexbx
1oe1_A_281	1oe1	A	286	296	LYTFKQPGVYA	EEE--S-EEEE	bbbxabxebxb
1paz_*_64	1paz	-	65	75	VLTVTQPGAYL	EEE--S-EEEE	bbxbaxxebbb
1pcs_*_69	1pcs	-	71	81	TSTFTEPGTYT	EEE--S-EEEE	bbbbabxebbx
1pg6_A_84	1pg6	A	87	97	ALAPNTPGQIV	EE--SSSB-EE	bbbxabxebbb
1pmy_*_64	1pmy	-	65	75	VVKFDKEGVYG	EEE--S-EEEE	bbxbaxxebbb
1qpo_A_40	1qpo	A	44	52	SLVTREAGV..	EEEESS-EE..	bxbxabxeb..
2cua_A_133	2cua	A	136	146	RYTFKRPGEYR	EEE--S-EEEE	bbbxabwebbb
2f3g_A_20	2f3g	A	21	31	EIIAPLSGEIV	EEE-SSSEEEE	bxxpabxebpb
2gpr_*_13	2gpr	-	14	24	KVLAPCDGTII	EEE-SSSEEEE	xbxxabxebxb
2plt_*_72	2plt	-	72	81	.VKLTAAGEYG	.EE--S-EEEE	.bxbaxxebbx
7pcy_*_69	7pcy	-	71	81	VRKLTTPGTYG	EEE--S-EEEE	bbbbaxwebbx

PDB ligands within a cut-off distance of 6 Å in this subclass

Loop	PDB	Chain	Ligands	Residue
1aoz_A_88	1aoz	A	NAGN-ACETYL-D-GLUCOSAMINE	F - 90
1aoz_A_88	1aoz	A	NAGN-ACETYL-D-GLUCOSAMINE	Y - 91
1aoz_A_88	1aoz	A	NAGN-ACETYL-D-GLUCOSAMINE	N - 92
1aoz_A_88	1aoz	A	CUCOPPER (II) ION	F - 102
1aoz_A_88	1aoz	A	C2OCU-O-CU LINKAGE	F - 102
1aoz_A_88	1aoz	A	CUCOPPER (II) ION	H - 104
1aoz_A_88	1aoz	A	C2OCU-O-CU LINKAGE	H - 104
1aoz_A_88	1aoz	A	C1OCU-O LINKAGE	H - 104
1aoz_A_489	1aoz	A	CUCOPPER (II) ION	A - 504
1aoz_A_489	1aoz	A	C2OCU-O-CU LINKAGE	A - 504
1aoz_A_489	1aoz	A	CUCOPPER (II) ION	H - 506
1aoz_A_489	1aoz	A	C2OCU-O-CU LINKAGE	H - 506
1aoz_A_489	1aoz	A	C1OCU-O LINKAGE	H - 506
1aoz_A_489	1aoz	A	CUCOPPER (II) ION	C - 507
1bdo_*_81	1bdo	*	BTNBIOTIN	Y - 92
1gw0_A_121	1gw0	A	O2OXYGEN MOLECULE	W - 136
1gw0_A_121	1gw0	A	CUCOPPER (II) ION	W - 136
1gw0_A_121	1gw0	A	O2OXYGEN MOLECULE	H - 138
1gw0_A_121	1gw0	A	CUCOPPER (II) ION	H - 138
1gw0_A_121	1gw0	A	O2OXYGEN MOLECULE	S - 139
1gyc_A_436	1gyc	A	NAGN-ACETYL-D-GLUCOSAMINE	N - 436
1gyc_A_436	1gyc	A	NAGN-ACETYL-D-GLUCOSAMINE	T - 438
1gyc_A_436	1gyc	A	CUCOPPER (II) ION	F - 450
1gyc_A_436	1gyc	A	CUCOPPER (II) ION	H - 452
1gyc_A_436	1gyc	A	CUCOPPER (II) ION	C - 453
1hfu_A_435	1hfu	A	CUCOPPER (II) ION	F - 449
1hfu_A_435	1hfu	A	CUCOPPER (II) ION	H - 451
1hfu_A_435	1hfu	A	CUCOPPER (II) ION	C - 452
1j9q_A_287	1j9q	A	NO2NITRITE ION	V - 304
1kbv_A_117	1kbv	A	CUCOPPER (II) ION	I - 132
1kbv_A_117	1kbv	A	CUCOPPER (II) ION	H - 134
1kbv_A_117	1kbv	A	NO2NITRITE ION	H - 134
1nif_*_118	1nif	*	CUCOPPER (II) ION	V - 133
1nif_*_118	1nif	*	CUCOPPER (II) ION	H - 135
1nif_*_118	1nif	*	MTOBOUND WATER	H - 135
1o6u_A_350	1o6u	A	MSESELENOMETHIONINE	V - 362
1o6u_A_350	1o6u	A	MSESELENOMETHIONINE	R - 364
1oe1_A_112	1oe1	A	PCAPYROGLUTAMIC ACID	K - 119
1oe1_A_112	1oe1	A	CUCOPPER (II) ION	V - 127
1oe1_A_112	1oe1	A	CUCOPPER (II) ION	H - 129
1oe1_A_281	1oe1	A	PG4TETRAETHYLENE GLYCOL	V - 294
1oe1_A_281	1oe1	A	PG4TETRAETHYLENE GLYCOL	Y - 295
1oe1_A_281	1oe1	A	PG4TETRAETHYLENE GLYCOL	A - 296
1oe1_A_281	1oe1	A	PG4TETRAETHYLENE GLYCOL	L - 298
1pg6_A_84	1pg6	A	MSESELENOMETHIONINE	L - 86
1pg6_A_84	1pg6	A	MSESELENOMETHIONINE	A - 87
1pg6_A_84	1pg6	A	CACALCIUM ION	A - 87
1pg6_A_84	1pg6	A	MSESELENOMETHIONINE	L - 88
1pg6_A_84	1pg6	A	CACALCIUM ION	L - 88
1pg6_A_84	1pg6	A	MSESELENOMETHIONINE	A - 89
1pg6_A_84	1pg6	A	CACALCIUM ION	A - 89
1pg6_A_84	1pg6	A	CACALCIUM ION	P - 90
1pg6_A_84	1pg6	A	CACALCIUM ION	N - 91
1pg6_A_84	1pg6	A	CACALCIUM ION	T - 92
1pg6_A_84	1pg6	A	CACALCIUM ION	P - 93
1pg6_A_84	1pg6	A	CACALCIUM ION	G - 94
1pg6_A_84	1pg6	A	CACALCIUM ION	Q - 95
2cua_A_133	2cua	A	ZNZINC ION	I - 148

PDB Site Annotated loops in this subclass

Loop	PDB	Chain	Site	Residue
1gw0_A_121	1gw0	A	DC9NAG BINDING SITE FOR CHAIN B	R - 126
1gw0_A_121	1gw0	A	DC1SO4 BINDING SITE FOR CHAIN A	R - 128
1gw0_A_121	1gw0	A	DC1SO4 BINDING SITE FOR CHAIN A	R - 130
1gw0_A_121	1gw0	A	AC4CU BINDING SITE FOR CHAIN A	W - 136
1gw0_A_121	1gw0	A	AC1O2 BINDING SITE FOR CHAIN A	H - 138
1gyc_A_436	1gyc	A	NA6NAG BINDING SITE FOR CHAIN A	N - 436
1gyc_A_436	1gyc	A	CU2CU BINDING SITE FOR CHAIN A	H - 452
1gyc_A_436	1gyc	A	CU4CU BINDING SITE FOR CHAIN A	C - 453
1hfu_A_435	1hfu	A	T1TYPE 1 CU BINDING SITE.	C - 452
1oe1_A_112	1oe1	A	AC2CU BINDING SITE FOR CHAIN A	H - 129
1oe1_A_281	1oe1	A	AC3PG4 BINDING SITE FOR CHAIN A	A - 296

Clusters included in this Subclass