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Information on SUBCLASS 4.5.1
Subclass Accession number: 3892
Subclass: 4.5.1 PSSM
Type: AR beta-beta link
DB: ArchDB95

Image coordinates: Rasmol PDB Jmol PDB
Consensus coordinates: Rasmol PDB Jmol PDB
Number of loops: 19

Average sequence ID (%) : 16.3 +/- 17.1
Average RMSD (Å) : 0.695 +/- 0.181

Consensus geometry
d (Å): 9 delta (°): 45-90 theta (°): 135-180 rho (°): 135-180
Consensus Sequence: XhhXcXph
(φψ)-conformation: bbppgpbb
Pattern: x[cfiltvy]x[acil][agimpy][DEKPRST][DEGNST]xx[ilmptv]x
Conservation:-1.0000.080-1.1601.487-0.6310.1771.662-0.792-0.784-0.038-1.000
Loops included in this Subclass
LoopPDBChainStartEndSequenceSec StructRamachandran
1b6a_*_4471b6a   -447456.LCDIKGSYTA.EE-STT--EE.bbxxpvxbbb
1bhe_*_571bhe   -5766.LSLPSGVSLL.EE--TT-EEE.bbxxxvbbbb
1dx5_I_3681dx5   I369379LCVCAEGFAPIEEE--TTEEEEbxbbxxvbbpx
1e2w_A_701e2w   A7483VLILPEGFEL.EEE--TT-EE.bbbxxpgxbx.
1f42_A_2731f42   A275285TVICRKNASISEEE--TT-EEEbbbxbpvxbxb
1fye_A_1861fye   A187197VIGLPEGNWIQEEE--TT-EEEbbxxxpvbbbb
1g40_A_911g40   A9199.YSCNSGYHL..EE--TT-EE..xxbxpGpbx.
1gui_A_631gui   A6878WIGLYRGKTYTEEE--TT-EEExbxbxpvbxbb
1ijq_A_6731ijq   A674683TCACPDGMLL.EEE--TT-EE.bxbbppvbbx.
1kzq_A_291kzq   A3141TLKCPKTALTEEEE--TT-EEEbbbbxxvxbxb
1lml_*_5331lml   -533542.TNCTPGLRVE.EE--TT-EEE.bpbxpgxbbx
1nzi_A_1381nzi   A140149FCSCPPEYFL.EEE--TT-EE.bbbbxpvbbx.
1o59_A_1351o59   A140150KFECGPSQRHLEEE--TT-EEEpbxbbxlbxbb
1ogm_X_5241ogm   X525535IIPAASGLTMGEE---TT--EEbbxpbpvbbbx
1opk_A_4041opk   A404413.SRLMTGDTYT.EE--TT--EE.bxbppgxbbb
1uzp_A_15091uzp   A15101519ICDCPPDFEL.EEE--TT-EE.bbxxxpvbbx.
1uzp_A_16281uzp   A16301640QCRCPTGYYLNEEE--TT--EEbbbxxpvbbxx
2sak_*_382sak   -4655EFPIKPGTTL.EEE--TT-EE.bbxbbpgxxx.
4bcl_*_3084bcl   -314324KIVLPKGYKIREEE--TT-EEEbbbxxpgxbxa
PDB ligands within a cut-off distance of 6 Å in this subclass
LoopPDBChainLigandsResidue
1b6a_*_4471b6a   *     TNP3,5,6,8-TETRAMETHYL-N-METHYL PHENANTHROLINIUM L - 447
1b6a_*_4471b6a   *     TNP3,5,6,8-TETRAMETHYL-N-METHYL PHENANTHROLINIUM Q - 457
1b6a_*_4471b6a   *     COCOBALT (II) ION Q - 457
1b6a_*_4471b6a   *     TNP3,5,6,8-TETRAMETHYL-N-METHYL PHENANTHROLINIUM E - 459
1b6a_*_4471b6a   *     COCOBALT (II) ION E - 459
1dx5_I_3681dx5   I     FMTFORMIC ACID A - 373
1dx5_I_3681dx5   I     FMTFORMIC ACID F - 376
1e2w_A_701e2w   A     HECHEME C N - 70
1e2w_A_701e2w   A     HECHEME C V - 71
1e2w_A_701e2w   A     HECHEME C G - 72
1e2w_A_701e2w   A     HECHEME C M - 73
1e2w_A_701e2w   A     HECHEME C V - 74
1f42_A_2731f42   A     MNB5-MERCAPTO-2-NITRO-BENZOIC ACID S - 285
1f42_A_2731f42   A     MNB5-MERCAPTO-2-NITRO-BENZOIC ACID R - 287
1gui_A_631gui   A     BGCBETA-D-GLUCOSE Q - 64
1gui_A_631gui   A     BGCBETA-D-GLUCOSE N - 66
1gui_A_631gui   A     GOLGLYCEROL K - 82
1gui_A_631gui   A     GOLGLYCEROL K - 84
1nzi_A_1381nzi   A     CACALCIUM ION G - 138
1nzi_A_1381nzi   A     CACALCIUM ION Y - 139
1o59_A_1351o59   A     MSESELENOMETHIONINE I - 137
1o59_A_1351o59   A     MSESELENOMETHIONINE V - 138
1o59_A_1351o59   A     MSESELENOMETHIONINE E - 139
1o59_A_1351o59   A     MSESELENOMETHIONINE F - 141
1o59_A_1351o59   A     MSESELENOMETHIONINE F - 151
1o59_A_1351o59   A     MSESELENOMETHIONINE V - 152
1uzp_A_15091uzp   A     SMSAMARIUM (III) ION Y - 1509
1uzp_A_16281uzp   A     SMSAMARIUM (III) ION S - 1628
1uzp_A_16281uzp   A     SMSAMARIUM (III) ION F - 1629
4bcl_*_3084bcl   *     BCLBACTERIOCHLOROPHYLL A T - 311
4bcl_*_3084bcl   *     BCLBACTERIOCHLOROPHYLL A L - 313
4bcl_*_3084bcl   *     BCLBACTERIOCHLOROPHYLL A I - 315
PDB Site Annotated loops in this subclass
LoopPDBChainSiteResidue
1e2w_A_701e2w   A AC1HEC BINDING SITE FOR CHAIN AN - 70
1e2w_A_701e2w   A AC1HEC BINDING SITE FOR CHAIN AG - 72
1gui_A_631gui   A AC9BGC BINDING SITE FOR CHAIN AQ - 64
1gui_A_631gui   A AC9BGC BINDING SITE FOR CHAIN AN - 66
1gui_A_631gui   A AC4GOL BINDING SITE FOR CHAIN AK - 82
1gui_A_631gui   A AC3GOL BINDING SITE FOR CHAIN AK - 84
1lml_*_5331lml   * CA3CARBOHYDRATE BINDING SITE.N - 534
1uzp_A_16281uzp   A AC2SM BINDING SITE FOR CHAIN AS - 1628

Clusters included in this Subclass
CLUSTER: AR.4.163
CLUSTER: AR.5.38
CLUSTER: AR.6.112
CLUSTER: AR.6.22
CLUSTER: AR.7.106