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Information on SUBCLASS 4.6.2
Subclass Accession number: 3898
Subclass: 4.6.2 PSSM
Type: AR beta-beta link
DB: ArchDB95

Image coordinates: Rasmol PDB Jmol PDB
Consensus coordinates: Rasmol PDB Jmol PDB
Number of loops: 7

Average sequence ID (%) : 16.9 +/- 22.9
Average RMSD (Å) : 0.686 +/- 0.248

Consensus geometry
d (Å): 13 delta (°): 0-45 theta (°): 0-45 rho (°): 135-180
Consensus Sequence: XXXXphXh
(φψ)-conformation: bbpaapbb
Pattern: [aknrs]xx[knpr][DEN][gly]x[fgy]x
Conservation:-0.047-0.960-0.457-0.1462.198-0.646-0.845-0.0360.939
Loops included in this Subclass
LoopPDBChainStartEndSequenceSec StructRamachandran
1a0t_P_1811a0t   P187195RFDRDNFDIEE-TT-EEEbxpaaxbbb
1c22_A_1631c22   A163171SVVREYCGHEE-SS--EEbbxaabbxb
1eaq_A_1281eaq   A129136ARFNDLRF.EE-SS-EE.bxxaaxbx.
1n8y_C_2611n8y   C261269MHNPEGRYTEE-TT--EEbxxaapbxx
1o0x_A_1661o0x   A166174NVIRDYVGHEE--SS-EEbxxaabbxb
1qxy_A_1601qxy   A160168KVIKNLTGHEE-TT--EEbbxaabbxb
1xgs_A_1451xgs   A145153KPIVNLSGHEE-TT--EEbxxaabbxb
PDB ligands within a cut-off distance of 6 Å in this subclass
LoopPDBChainLigandsResidue
1a0t_P_1811a0t   P     SUCSUCROSE F - 188
1a0t_P_1811a0t   P     SUCSUCROSE N - 192
1a0t_P_1811a0t   P     SUCSUCROSE D - 194
1a0t_P_1811a0t   P     SUCSUCROSE I - 195
1c22_A_1631c22   A     COCOBALT (II) ION C - 169
1c22_A_1631c22   A     MF32-AMINO-4-TRIFLUOROMETHYLSULFANYL-BUTYRIC ACID C - 169
1c22_A_1631c22   A     COCOBALT (II) ION G - 170
1c22_A_1631c22   A     COCOBALT (II) ION H - 171
1c22_A_1631c22   A     MF32-AMINO-4-TRIFLUOROMETHYLSULFANYL-BUTYRIC ACID H - 171
1eaq_A_1281eaq   A     MSESELENOMETHIONINE V - 128
1eaq_A_1281eaq   A     MSESELENOMETHIONINE A - 129
1qxy_A_1601qxy   A     ACTACETATE ION K - 160
1qxy_A_1601qxy   A     ACTACETATE ION V - 161
1qxy_A_1601qxy   A     ACTACETATE ION I - 162
1qxy_A_1601qxy   A     ACTACETATE ION K - 163
1qxy_A_1601qxy   A     M2C(2S)-2-AMINO-4-(METHYLSULFANYL)-1-PYRIDIN-2-YLBUTANE-1,1-DIOL L - 165
1qxy_A_1601qxy   A     COCOBALT (II) ION T - 166
1qxy_A_1601qxy   A     M2C(2S)-2-AMINO-4-(METHYLSULFANYL)-1-PYRIDIN-2-YLBUTANE-1,1-DIOL T - 166
1qxy_A_1601qxy   A     COCOBALT (II) ION G - 167
1qxy_A_1601qxy   A     COCOBALT (II) ION H - 168
1qxy_A_1601qxy   A     M2C(2S)-2-AMINO-4-(METHYLSULFANYL)-1-PYRIDIN-2-YLBUTANE-1,1-DIOL H - 168
1xgs_A_1451xgs   A     COCOBALT (II) ION S - 151
1xgs_A_1451xgs   A     COCOBALT (II) ION G - 152
1xgs_A_1451xgs   A     COCOBALT (II) ION H - 153
PDB Site Annotated loops in this subclass
LoopPDBChainSiteResidue
1xgs_A_1451xgs   A ACASIDE CHAINS OF FIVE AMINO ACID RESIDUES ASP 82, ASP 93, HIS 153, GLU 187, GLU 280, TWO COBALT IONS SEPARATED BY 3.1 ANGSTROM, AND A BRIDGING WATER MOLECULE HOH 1 BOUND TO BOTH COBALT IONS FORM AN ACTIVE SITE OF MOLECULE IN CHAIN A.H - 153

Clusters included in this Subclass
CLUSTER: AR.4.104
CLUSTER: AR.5.104