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PDB code:

Information on SUBCLASS 5.1.1

Subclass Accession number: 3987 Subclass: 5.1.1 Type: AR beta-beta link DB: ArchDB95 Image coordinates: Consensus coordinates:

Number of loops: 59 Average sequence ID (%) : 13.3 +/- 15.6 Average RMSD (Å) : 0.625 +/- 0.357 Consensus geometry d (Å): 9 delta (°): 45-90 theta (°): 135-180 rho (°): 135-180

Loops included in this Subclass

Loop	PDB	Chain	Start	End	Sequence	Sec Struct	Ramachandran
1ahs_A_231	1ahs	A	233	242	VGNPGARRSI	EEE-SSS-EE	bbbaxabxbb
1aun_*_3	1aun	-	6	15	VHNNCPYTVW	EEE-SSS-EE	bbbaxaxxbx
1bag_*_370	1bag	-	373	382	LANAGSSSVS	EEE-SSS-EE	bbbaxabxbx
1bf2_*_681	1bf2	-	684	693	AYNGWSSSVT	EEE-SSS-EE	bbxaxabpbx
1du5_A_2	1du5	A	5	14	VVNQCPFTVW	EEE-SSS-EE	bbxaxabxbb
1dun_*_80	1dun	-	83	92	CTNIGKSNIK	EEE-SSS-EE	bbbaxabpbb
1efv_A_153	1efv	A	157	166	VKCDEKVKVF	EE---SSEEE	bbbaxabxbb
1ejx_B_2021	1ejx	B	2026	2035	VENHGDRPIQ	EEE-SSS-EE	bbxaxabxbb
1euw_A_96	1euw	A	101	110	VWNRGQDSFT	EEE-SSS-EE	bbxababpbb
1ex0_A_533	1ex0	A	539	548	FRNNSHNRYT	EEE-SSS-EE	bbxaxabxbb
1f7d_A_79	1f7d	A	82	91	MINVSRKSIT	EEE-SSS-EE	bbxaxabpbb
1fi2_A_137	1fi2	A	139	148	QFNVGKTEAY	EEE-SSS-EE	bbxaxabxbb
1g5a_A_575	1g5a	A	578	587	FGNFSEYPQT	EEE-SSS-EE	bbxababxbb
1gef_A_42	1gef	A	48	57	KVTKKDHLYV	EEESSS-EEE	bbbaxabbxb
1gjw_A_593	1gjw	A	598	607	AANVGKEPKE	EEE-SSS-EE	bbxaxabwbb
1iby_A_47	1iby	A	52	61	VENKSPISEG	EEE-SSS-EE	bbxaxabpbb
1ifr_A_451	1ifr	A	454	463	LRNKSNEDQS	EEE-SSS-EE	bbxaxabxbx
1ig0_A_295	1ig0	A	296	305	CFIDTKDDII	EEEEESS-EE	bbbbbabpbx
1ig3_A_246	1ig3	A	247	256	VTVETDHPLL	EEEEESS-EE	bbbbbabpbx
1j1l_A_225	1j1l	A	228	237	VENKDPKRSH	EE--SSS-EE	bbbabaxxxb
1j3q_A_136	1j3q	A	139	148	TINTGDKPFI	EEE-SSS-EE	bbbababpbb
1ji1_A_578	1ji1	A	582	591	VLNNDSVSHT	EEE-SSS-EE	bbbaxabxbx
1jsm_A_160	1jsm	A	164	173	YNNTNQEDLL	EE--SSS-EE	bxxaxaxxbx
1juh_A_110	1juh	A	114	123	FQIQDPDTEM	EEE-STTEEE	bbxaxabxbb
1juh_A_309	1juh	A	311	320	YYSEAYFSKV	EEESSSSEEE	bbxaxabbbb
1khu_A_287	1khu	A	287	296	FHASSTSVLV	EE--SSEEEE	bbxababbbb
1khu_A_342	1khu	A	345	354	AECLSDSSIF	EEE-SSS-EE	bbxaxaxxbb
1khx_A_344	1khx	A	347	356	AECLSDSAIF	EEE-SSS-EE	bbxaxabxbb
1kij_A_250	1kij	A	257	266	LHTQGYNAEI	EEBSSS--EE	bbbaxaxbbb
1l0q_A_345	1l0q	A	345	353	.SSKKQNPTH	.EE-SSS-EE	.bbaxabxbb
1l4i_A_141	1l4i	A	142	151	LFNPTPYYLT	EE--SSS-EE	bbbababxbb
1msp_A_29	1msp	A	33	42	ITNAGGRRIG	EEE-SSS-EE	bbxababpbb
1mxg_A_364	1mxg	A	367	376	YINLSPNWVG	EEE-SSS-EE	bbbaxabxbb
1n7o_A_677	1n7o	A	684	693	IQNTSTDTAA	EEE-SSS-EE	xbbaxaxxbb
1na8_A_540	1na8	A	547	556	MLSTAPQPIR	EEE--SS-EE	bbbaxabxbb
1nbc_A_20	1nbc	A	24	33	VTNTGSSAID	EEE-SSS-EE	bbxaxabpbx
1nof_A_347	1nof	A	351	360	AVNTNDSDQM	EEE-SSS-EE	bbbaxabxbx
1nxm_A_82	1nxm	A	84	93	ISVADGGKVL	EEE-SS--EE	bbbabaxbbx
1o4t_A_101	1o4t	A	104	113	IENTGNTDLE	EE--SSS-EE	bbxababxxb
1od5_A_131	1od5	A	133	142	TYNTGDEPVV	EEE-SSS-EE	bbxaxaxxxb
1ogm_X_280	1ogm	X	280	289	IEYFTKQNFY	EEE--SS-EE	bbxaxabpbb
1ogs_A_456	1ogs	A	460	469	VLNRSSKDVP	EEE-SSS-EE	bbbaxabxbw
1ok0_A_20	1ok0	A	23	32	ADNGCAETVT	EEE-SSS-EE	bbxaxabpbb
1p5v_A_166	1p5v	A	169	178	AENPSPFYMN	EEE-SSS-EE	xbbaxabxbx
1pfo_*_392	1pfo	-	396	405	LDHSGAYVAQ	EEE--SS-EE	bbbaxabxbb
1pm4_A_96	1pm4	A	100	109	IKNNSSETSN	EEE-SSS-EE	bbxaxaxxbx
1poc_*_50	1poc	-	50	59	LTNTASHTRL	EE--SSS-EE	bbxaxabxbb
1q5h_A_87	1q5h	A	90	99	LFNFGKEKFE	EEE-SSS-EE	xbbaxabpbb
1qwt_A_280	1qwt	A	283	292	AQRLGHCHTY	EEE-SSS-EE	bbxaxaxxbb
1qxr_A_135	1qxr	A	138	147	TVNIGDEPFI	EEE-SSS-EE	bbxababpbb
1row_A_17	1row	A	23	32	LVNGGAEKIV	EEE-SSS-EE	xbbaxabxbb
1rwr_A_272	1rwr	A	273	282	LSLKGAGVVS	EEEEESS-EE	bbbbbaxxbb
1sfp_*_76	1sfp	-	82	91	YRSSGSIMTV	EE-SSSEEEE	bbxababbbb
1smd_*_425	1smd	-	428	437	VFNNDDWTFS	EEE-SSS-EE	bbbaxabpbb
1uxx_X_52	1uxx	X	59	68	VASGADTPTN	EEE--SS-EE	bbbaxabxbx
1vj2_A_92	1vj2	A	94	103	FRNDTDSEVE	EE--SSS-EE	bbbababxbb
1ygs_*_396	1ygs	-	399	408	VRCLSDHAVF	EEE-SSS-EE	bbxaxabxbb
2viu_A_164	2viu	A	168	177	MPNNDNFDKL	EE--SSS-EE	bxxaxabxbb
4ubp_B_27	4ubp	B	32	41	VSNTGDRPIQ	EEE-SSS-EE	bbxaxabxbb

PDB ligands within a cut-off distance of 6 Å in this subclass

Loop	PDB	Chain	Ligands	Residue
1euw_A_96	1euw	A	EMCETHYL MERCURY ION	Q - 96
1euw_A_96	1euw	A	GOLGLYCEROL	Q - 96
1euw_A_96	1euw	A	GOLGLYCEROL	L - 97
1euw_A_96	1euw	A	GOLGLYCEROL	M - 98
1euw_A_96	1euw	A	GOLGLYCEROL	I - 99
1euw_A_96	1euw	A	GOLGLYCEROL	S - 100
1fi2_A_137	1fi2	A	MNMANGANESE (II) ION	H - 137
1fi2_A_137	1fi2	A	MNMANGANESE (II) ION	Q - 139
1fi2_A_137	1fi2	A	MNMANGANESE (II) ION	M - 149
1fi2_A_137	1fi2	A	MNMANGANESE (II) ION	V - 151
1fi2_A_137	1fi2	A	MNMANGANESE (II) ION	F - 153
1iby_A_47	1iby	A	HEZHEXANE-1,6-DIOL	S - 56
1iby_A_47	1iby	A	HEZHEXANE-1,6-DIOL	I - 58
1iby_A_47	1iby	A	CUCOPPER (II) ION	S - 59
1iby_A_47	1iby	A	HEZHEXANE-1,6-DIOL	S - 59
1iby_A_47	1iby	A	CUCOPPER (II) ION	E - 60
1iby_A_47	1iby	A	HEZHEXANE-1,6-DIOL	E - 60
1iby_A_47	1iby	A	CUCOPPER (II) ION	G - 61
1j3q_A_136	1j3q	A	FEFE (III) ION	H - 137
1j3q_A_136	1j3q	A	FEFE (III) ION	Y - 153
1jsm_A_160	1jsm	A	NAGN-ACETYL-D-GLUCOSAMINE	N - 165
1jsm_A_160	1jsm	A	NAGN-ACETYL-D-GLUCOSAMINE	N - 166
1jsm_A_160	1jsm	A	NAGN-ACETYL-D-GLUCOSAMINE	T - 167
1juh_A_110	1juh	A	CUCOPPER (II) ION	H - 112
1juh_A_110	1juh	A	EDO1,2-ETHANEDIOL	H - 112
1juh_A_110	1juh	A	EDO1,2-ETHANEDIOL	F - 114
1juh_A_110	1juh	A	NAGN-ACETYL-D-GLUCOSAMINE	Q - 117
1juh_A_110	1juh	A	EDO1,2-ETHANEDIOL	M - 123
1juh_A_309	1juh	A	NAGN-ACETYL-D-GLUCOSAMINE	S - 325
1mxg_A_364	1mxg	A	MGMAGNESIUM ION	R - 377
1o4t_A_101	1o4t	A	MNMANGANESE (II) ION	H - 102
1o4t_A_101	1o4t	A	OXLOXALATE ION	H - 102
1o4t_A_101	1o4t	A	OXLOXALATE ION	F - 114
1o4t_A_101	1o4t	A	OXLOXALATE ION	A - 116
1o4t_A_101	1o4t	A	MNMANGANESE (II) ION	I - 118
1o4t_A_101	1o4t	A	OXLOXALATE ION	I - 118
1od5_A_131	1od5	A	CO3CARBONATE ION	Y - 131
1od5_A_131	1od5	A	CO3CARBONATE ION	W - 132
1od5_A_131	1od5	A	CO3CARBONATE ION	T - 133
1od5_A_131	1od5	A	CO3CARBONATE ION	V - 141
1od5_A_131	1od5	A	CO3CARBONATE ION	A - 143
1poc_*_50	1poc	*	GEL1-O-OCTYL-2-HEPTYLPHOSPHONYL-SN-GLYCERO-3-PHOSPHOETHANOLAMINE	H - 56
1poc_*_50	1poc	*	GEL1-O-OCTYL-2-HEPTYLPHOSPHONYL-SN-GLYCERO-3-PHOSPHOETHANOLAMINE	T - 57
1poc_*_50	1poc	*	GEL1-O-OCTYL-2-HEPTYLPHOSPHONYL-SN-GLYCERO-3-PHOSPHOETHANOLAMINE	R - 58
1poc_*_50	1poc	*	GEL1-O-OCTYL-2-HEPTYLPHOSPHONYL-SN-GLYCERO-3-PHOSPHOETHANOLAMINE	L - 59
1q5h_A_87	1q5h	A	DUDDEOXYURIDINE-5'-DIPHOSPHATE	G - 87
1q5h_A_87	1q5h	A	DUDDEOXYURIDINE-5'-DIPHOSPHATE	V - 88
1q5h_A_87	1q5h	A	DUDDEOXYURIDINE-5'-DIPHOSPHATE	V - 89
1qwt_A_280	1qwt	A	PO4PHOSPHATE ION	L - 281
1qwt_A_280	1qwt	A	PO4PHOSPHATE ION	Q - 284
1qwt_A_280	1qwt	A	PO4PHOSPHATE ION	G - 287
1qwt_A_280	1qwt	A	PO4PHOSPHATE ION	H - 288
1qxr_A_135	1qxr	A	NINICKEL (II) ION	H - 136
1qxr_A_135	1qxr	A	PA55-PHOSPHOARABINONIC ACID	H - 136
1qxr_A_135	1qxr	A	PA55-PHOSPHOARABINONIC ACID	R - 137
1qxr_A_135	1qxr	A	PA55-PHOSPHOARABINONIC ACID	T - 138
1qxr_A_135	1qxr	A	PA55-PHOSPHOARABINONIC ACID	F - 148
1qxr_A_135	1qxr	A	PA55-PHOSPHOARABINONIC ACID	A - 150
1qxr_A_135	1qxr	A	PA55-PHOSPHOARABINONIC ACID	I - 151
1qxr_A_135	1qxr	A	NINICKEL (II) ION	Y - 152
1qxr_A_135	1qxr	A	PA55-PHOSPHOARABINONIC ACID	Y - 152
1uxx_X_52	1uxx	X	XYPBETA-D-XYLOPYRANOSE	G - 62
1uxx_X_52	1uxx	X	XYPBETA-D-XYLOPYRANOSE	A - 63
1uxx_X_52	1uxx	X	XYPBETA-D-XYLOPYRANOSE	D - 64
1uxx_X_52	1uxx	X	XYPBETA-D-XYLOPYRANOSE	T - 65
1uxx_X_52	1uxx	X	XYPBETA-D-XYLOPYRANOSE	P - 66
1vj2_A_92	1vj2	A	MNMANGANESE (II) ION	H - 92
1vj2_A_92	1vj2	A	MNMANGANESE (II) ION	F - 94
2viu_A_164	2viu	A	NAGN-ACETYL-D-GLUCOSAMINE	V - 166

PDB Site Annotated loops in this subclass

Loop	PDB	Chain	Site	Residue
1od5_A_131	1od5	A	AC1CO3 BINDING SITE FOR CHAIN A	Y - 131
1od5_A_131	1od5	A	AC1CO3 BINDING SITE FOR CHAIN A	T - 133
1ogs_A_456	1ogs	A	AC8SO4 BINDING SITE FOR CHAIN A	K - 473
1uxx_X_52	1uxx	X	AC2XYP BINDING SITE FOR CHAIN X	A - 63
1uxx_X_52	1uxx	X	AC2XYP BINDING SITE FOR CHAIN X	D - 64
1uxx_X_52	1uxx	X	AC2XYP BINDING SITE FOR CHAIN X	T - 65

Clusters included in this Subclass

CLUSTER: AR.4.106

CLUSTER: AR.4.11

CLUSTER: AR.4.145

CLUSTER: AR.5.265

CLUSTER: AR.5.3

CLUSTER: AR.5.64

CLUSTER: AR.5.70

CLUSTER: AR.5.95

CLUSTER: AR.6.229

CLUSTER: AR.6.35

CLUSTER: AR.6.5

CLUSTER: AR.6.54

CLUSTER: AR.6.79

CLUSTER: AR.7.72

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