Information on SUBCLASS 5.39.1 |
Subclass Accession number: 400
Subclass: 5.39.1 Type: HE alpha-beta DB: ArchDB40 Image coordinates: Consensus coordinates: Conserved Annotation EC : 1.1 (>75 %) 1.1.1 (>75 %) 1.1.1.262 GO : GO:0003677 (>50 %) GO:0003684 (>50 %) GO:0016614 (>75 %) GO:0016616 (>75 %) GO:0050570 (>75 %) SCOP : 102656 (>75 %) 52539 (>50 %) 52540 (>50 %) 52686 (>50 %) 53658 (>75 %) 53659 (>75 %) |
Number of loops: 3 Average sequence ID (%) : 24.4 +/- 33.9 Average RMSD (Å) : 0.700 +/- 0.265 Consensus geometry
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Consensus Sequence: | pXhXXpXXX |
(φψ)-conformation: | aapbaapbb |
Pattern: | [EL] | [LTV] | [AP] | x | [IL] | x | [EHK] | [AEN] | [AL] | [PT] | [EP] | [ENY] | [SV] | x | [NV] |
Conservation: | -0.856 | -0.105 | 0.807 | -0.578 | 2.090 | -1.488 | 0.668 | -0.723 | 0.048 | 1.264 | 1.264 | -0.569 | -0.633 | -0.380 | -0.808 |
Loops included in this Subclass |
Loop | PDB | Chain | Start | End | Sequence | Sec Struct | Ramachandran |
1e3m_A_676 | 1e3m | A | 676 | 690 | ETANILHNATEYSLV | HHHHHHHH--TT-EE | aaaaaaaaxbaaxxb |
1ewq_A_645 | 1ewq | A | 645 | 659 | EVALILKEATENSLV | HHHHHHHH--TTEEE | aaaaaaaaxbaaxbb |
1i7q_A_80 | 1i7q | A | 80 | 94 | LLPLLDEALPPEVRN | HHHHHHHHS-TTSEE | aaaaaaaaxxaaxxb |
PDB ligands within a cut-off distance of 6 Å in this subclass |
Loop | PDB | Chain | Ligands | Residue |
1e3m_A_676 | 1e3m | A | MSESELENOMETHIONINE | E - 676 |
1e3m_A_676 | 1e3m | A | MSESELENOMETHIONINE | T - 677 |
1e3m_A_676 | 1e3m | A | MSESELENOMETHIONINE | A - 678 |
1e3m_A_676 | 1e3m | A | MSESELENOMETHIONINE | N - 679 |
1e3m_A_676 | 1e3m | A | MSESELENOMETHIONINE | I - 680 |
1e3m_A_676 | 1e3m | A | MSESELENOMETHIONINE | L - 681 |
1e3m_A_676 | 1e3m | A | MSESELENOMETHIONINE | V - 690 |
1ewq_A_645 | 1ewq | A | MSESELENOMETHIONINE | E - 645 |
1ewq_A_645 | 1ewq | A | MSESELENOMETHIONINE | V - 646 |
1ewq_A_645 | 1ewq | A | MSESELENOMETHIONINE | A - 647 |
1ewq_A_645 | 1ewq | A | MSESELENOMETHIONINE | L - 648 |
1ewq_A_645 | 1ewq | A | EDO1,2-ETHANEDIOL | E - 652 |
1ewq_A_645 | 1ewq | A | MSESELENOMETHIONINE | L - 658 |
Clusters included in this Subclass |
CLUSTER: HE.4.187 |