ArchDB - Biological DataBase of Protein Loops

Grup de Recerca en Informàtica Biomèdica

Information on SUBCLASS 5.6.1

Subclass Accession number: 4003
Subclass: 5.6.1

PSSM

Type: AR beta-beta link
DB: ArchDB95

Image coordinates:

Rasmol PDB

Jmol PDB

Consensus coordinates:

Rasmol PDB

Jmol PDB

Number of loops: 21

Average sequence ID (%) : 44.8 +/- 37.1
Average RMSD (Å) : 0.562 +/- 0.442

Consensus geometry

d (Å): 19

delta (°): 45-90

theta (°): 90-135

rho (°): 45-90

Consensus Sequence:	XpXXXXhXh
(φψ)-conformation:	bbppbppbb

Pattern:	x	x	x	x	x	x	x	x	x	x	x
Conservation:	-0.065	-1.038	-1.487	0.004	-0.649	-0.988	1.205	1.239	0.031	0.244	1.504

Loops included in this Subclass

Loop	PDB	Chain	Start	End	Sequence	Sec Struct	Ramachandran
1ay1_L_102	1ay1	L	105	115	ELKRADAAPTV	EE-------EE	xxxbpxbxxxx
1c1e_L_102	1c1e	L	105	115	EIKSADAAPTV	EE----B--EE	bxxbxxbxxbx
1c5c_L_102	1c5c	L	105	115	EIKRTVAAPSV	EE----B--EE	bxxbxxbxxxb
1cr9_L_102	1cr9	L	105	115	EIARADAAPTV	EEE---B--EE	bxxbxpbxxbx
1eyb_A_227	1eyb	A	229	239	IPIAWYEDRQV	EE-------EE	bxxpbbbbbxb
1fgn_L_102	1fgn	L	105	115	EINRADAAPTV	EEE---B--EE	bxxbxpbxxbx
1fns_L_102	1fns	L	105	115	EVKRADAAPTV	EE----B--EE	bxxbxpbxxxb
1g0x_A_184	1g0x	A	184	193	.EWSLPSDLLE	.EE------EE	.bbxxxxxxbb
1il1_B_107	1il1	B	110	120	EIRRADAAPTV	EEE---B--EE	bbxbxpbxxxb
1iqd_A_103	1iqd	A	106	116	EIKGTVAAPSV	EE----B--EE	bxxxxxbxxxb
1l7i_L_102	1l7i	L	105	115	EIKRTVAAPSV	EEE---B--EE	bxxbxxbxxxb
1mex_L_102	1mex	L	105	115	EIKRADAAPTV	EE----B--EE	bbxbxpbxxxb
1mju_L_102	1mju	L	105	115	ELKRADAAPTV	EE----B--EE	bxxxxxbxxbb
1n0x_L_102	1n0x	L	105	115	ERKRTVAAPSV	EE----B--EE	bxxbxxbxxxb
1ncw_L_102	1ncw	L	105	115	EIKRADAAPTV	EEE---B--EE	bxxbxpbxxxb
1nkr_*_184	1nkr	-	186	196	YEWSKSSDPLL	EEE------EE	abbxxxxxxbx
1rhh_A_102	1rhh	A	105	115	EIKRTVAAPSV	EEE------EE	bbxbxxbxxxb
1uct_A_183	1uct	A	183	192	.LWSFPSNALE	.EE------EE	.bbxxxxpxbb
1uun_A_72	1uun	A	79	89	NFSYTTPNILI	EEE------EE	bbbbbppbbbx
1yei_L_102	1yei	L	105	115	EILRADAAPTV	EE----B--EE	bxxbxpbxxbb
2f5b_L_102	2f5b	L	105	115	DVRRTVAAPSV	EE----B--EE	bxxbxpbxxxb

PDB ligands within a cut-off distance of 6 Å in this subclass

Loop	PDB	Chain	Ligands	Residue
1eyb_A_227	1eyb	A	MSESELENOMETHIONINE	L - 228
1eyb_A_227	1eyb	A	MSESELENOMETHIONINE	I - 229
1eyb_A_227	1eyb	A	MSESELENOMETHIONINE	P - 230

Clusters included in this Subclass

CLUSTER: AR.5.54

CLUSTER: AR.7.11