ArchDB - Biological DataBase of Protein Loops

Grup de Recerca en Informàtica Biomèdica

Information on SUBCLASS 5.12.2

Subclass Accession number: 4010
Subclass: 5.12.2

PSSM

Type: AR beta-beta link
DB: ArchDB95

Image coordinates:

Rasmol PDB

Jmol PDB

Consensus coordinates:

Rasmol PDB

Jmol PDB

Number of loops: 5

Average sequence ID (%) : 8.3 +/- 10.3
Average RMSD (Å) : 1.120 +/- 0.409

Consensus geometry

d (Å): 9

delta (°): 45-90

theta (°): 135-180

rho (°): 90-135

Consensus Sequence:	hpXpXpXpX
(φψ)-conformation:	bbpbabpbb

Pattern:	[FIKV]	x	x	x	x	x	[EQRT]	[ekp]	[eqty]	x	[GIMTV]	[CLPY]
Conservation:	0.510	0.553	0.736	-1.529	0.529	0.053	1.888	0.052	-0.307	-1.835	-0.460	-0.187

Loops included in this Subclass

Loop	PDB	Chain	Start	End	Sequence	Sec Struct	Ramachandran
1eyb_A_188	1eyb	A	188	199	FSIDVFEETRGY	EEEE-SSSEEEE	bbbxbabpbbbb
1j0h_A_530	1j0h	A	534	545	IINRSDQKADIP	EEE-SSS-EEEE	bbxxbabxbbbx
1ji2_A_526	1ji2	A	531	542	VLNNRGEKQTVL	EEE-SSS-EEEE	bbxxbabxbbbb
1p42_A_143	1p42	A	146	157	KAEPSDTLEVTY	EEE--SS-EEEE	bbbpbabxbbbb
1rhy_A_108	1rhy	A	113	124	VIDISSRPYFMC	EEE-SS--EEEE	bbbxbabxbbbb

PDB ligands within a cut-off distance of 6 Å in this subclass

Loop	PDB	Chain	Ligands	Residue
1eyb_A_188	1eyb	A	MSESELENOMETHIONINE	F - 188
1eyb_A_188	1eyb	A	MSESELENOMETHIONINE	S - 189
1eyb_A_188	1eyb	A	MSESELENOMETHIONINE	I - 190
1eyb_A_188	1eyb	A	MSESELENOMETHIONINE	D - 191
1eyb_A_188	1eyb	A	MSESELENOMETHIONINE	V - 192
1eyb_A_188	1eyb	A	MSESELENOMETHIONINE	Y - 199
1rhy_A_108	1rhy	A	HGMERCURY (II) ION	F - 122
1rhy_A_108	1rhy	A	EMCETHYL MERCURY ION	F - 122
1rhy_A_108	1rhy	A	HGMERCURY (II) ION	M - 123
1rhy_A_108	1rhy	A	EMCETHYL MERCURY ION	M - 123
1rhy_A_108	1rhy	A	HGMERCURY (II) ION	C - 124
1rhy_A_108	1rhy	A	EMCETHYL MERCURY ION	C - 124
1rhy_A_108	1rhy	A	HGMERCURY (II) ION	H - 125
1rhy_A_108	1rhy	A	EMCETHYL MERCURY ION	H - 125

Clusters included in this Subclass

CLUSTER: AR.4.155

CLUSTER: AR.5.214

CLUSTER: AR.6.214