ArchDB - Biological DataBase of Protein Loops

Grup de Recerca en Informàtica Biomèdica

Information on SUBCLASS 5.15.1

Subclass Accession number: 4014
Subclass: 5.15.1

PSSM

Type: AR beta-beta link
DB: ArchDB95

Image coordinates:

Rasmol PDB

Jmol PDB

Consensus coordinates:

Rasmol PDB

Jmol PDB

Number of loops: 10

Average sequence ID (%) : 15.4 +/- 18.0
Average RMSD (Å) : 0.600 +/- 0.249

Consensus geometry

d (Å): 11

delta (°): 45-90

theta (°): 135-180

rho (°): 90-135

Consensus Sequence:	XXhpXcpXh
(φψ)-conformation:	bbpbplpbb

Pattern:	x	x	x	[LMPVW]	[ekpqrs]	[dkpq]	[DGN]	x	x	[afilmv]	x
Conservation:	-1.000	-0.920	-0.615	0.443	0.387	0.040	2.283	0.215	-1.289	0.151	-0.695

Loops included in this Subclass

Loop	PDB	Chain	Start	End	Sequence	Sec Struct	Ramachandran
1ci9_A_239	1ci9	A	239	248	.VRMRDGIEVP	.EE--TTEEEE	.bxxbxvxbbp
1ds1_A_260	1ds1	A	261	271	AVYLEPGDLLI	EE---TT-EEE	bbxxbpvxbxb
1g6g_A_114	1g6g	A	114	123	.QKVEKNSNQL	.EE--TT--EE	.bxxxxvbxbx
1g6g_A_122	1g6g	A	122	131	.QLLSQGDEIT	.EE--TT-EEE	.bxxbpvxbbb
1jj2_E_27	1jj2	E	31	41	RRLWYPDIDVS	EE---TT-EEE	bbbbbplbbbb
1kqr_A_72	1kqr	A	73	83	TFNPPVDYWML	EE---TTEEEE	bbbxxxvbxxb
1nx4_A_231	1nx4	A	233	242	KHFWEDGDLL.	EE---TT-EE.	bbxxbpvxbb.
1oih_A_244	1oih	A	246	256	RWRWEAGDVAI	EE---TT-EEE	bbbxbpvxbbb
1otj_A_235	1otj	A	237	247	RWRWQPNDIAI	EE---TT-EEE	bbxxbpvxbbb
1tki_A_169	1tki	A	169	178	.RQLKPGDNFR	.EE--TT-EEE	.bxxxpvxbbb

PDB ligands within a cut-off distance of 6 Å in this subclass

Loop	PDB	Chain	Ligands	Residue
1ds1_A_260	1ds1	A	AKG2-OXYGLUTARIC ACID	L - 264
1kqr_A_72	1kqr	A	GOLGLYCEROL	W - 81
1nx4_A_231	1nx4	A	MSESELENOMETHIONINE	Y - 231
1nx4_A_231	1nx4	A	MSESELENOMETHIONINE	Y - 232
1nx4_A_231	1nx4	A	2OG2-OXO-GLUTARIC ACID	W - 236
1nx4_A_231	1nx4	A	MSESELENOMETHIONINE	L - 242

Clusters included in this Subclass

CLUSTER: AR.5.57

CLUSTER: AR.7.53