Information on SUBCLASS 6.1.2 |
Subclass Accession number: 403
Subclass: 6.1.2 Type: HE alpha-beta DB: ArchDB40 Image coordinates: Consensus coordinates: Conserved Annotation EC : 1.1 (>75 %) 1.1.1 (>75 %) GO : GO:0004457 (>75 %) GO:0004459 (>75 %) GO:0016614 (>75 %) GO:0016616 (>75 %) SCOP : 51734 (>75 %) 51735 (>75 %) 51848 (>75 %) |
Number of loops: 5 Average sequence ID (%) : 15.6 +/- 14.4 Average RMSD (Å) : 0.680 +/- 0.130 Consensus geometry
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Consensus Sequence: | phXXchcphX |
(φψ)-conformation: | aalbpaaabb |
Pattern: | [av] | [AIMT] | [ail] | [EKQRS] | [fhkr] | [FILY] | [GNR] | x | [DKN] | [DGP] | [DKNS] | [ehrs] | [il] | x | [IKV] | [aly] | [HL] | x |
Conservation: | -0.057 | -0.191 | -1.049 | 0.592 | -0.906 | 0.855 | 0.479 | -0.194 | 1.109 | 1.306 | 0.787 | -1.334 | 0.658 | -1.601 | 0.924 | -0.710 | 1.040 | -1.708 |
Loops included in this Subclass |
Loop | PDB | Chain | Start | End | Sequence | Sec Struct | Ramachandran |
1dbx_A_32 | 1dbx | A | 32 | 49 | EAAEKLGIDPNRSFKTLL | HHHHHHT--GGGBEEEEE | aaaaaavbpaaaxbbbbb |
1gyx_A_14 | 1gyx | A | 27 | 44 | VIIRHLNSKDSSISIALQ | HHHHHHT--GGG-EEEEE | aaaaaalbbaaabbbbbb |
1s0y_B_14 | 1s0y | B | 27 | 44 | VTNKSIGSDPKIINVLLV | HHHHHH---GGG-EEEEE | aaaaaavxxaaabbbbxb |
1st0_A_238 | 1st0 | A | 251 | 268 | AILQRYRMKGDHLRVYLH | HHHHHH---GGGEEEEEE | aaaaaavxxaaabbbbbb |
2pth_*_71 | 2pth | - | 76 | 93 | AMASFFRINPDEILVAHD | HHHHHHT--GGGEEEEEE | aaaaaalbxaaabbbxbx |
PDB ligands within a cut-off distance of 6 Å in this subclass |
Loop | PDB | Chain | Ligands | Residue |
1dbx_A_32 | 1dbx | A | MSESELENOMETHIONINE | K - 46 |
1dbx_A_32 | 1dbx | A | MSESELENOMETHIONINE | L - 48 |
1dbx_A_32 | 1dbx | A | MSESELENOMETHIONINE | L - 49 |
1dbx_A_32 | 1dbx | A | MSESELENOMETHIONINE | V - 50 |
1dbx_A_32 | 1dbx | A | MSESELENOMETHIONINE | A - 51 |
1gyx_A_14 | 1gyx | A | EPE4-(2-HYDROXYETHYL)-1-PIPERAZINE ETHANESULFONIC ACID | S - 34 |
1gyx_A_14 | 1gyx | A | EPE4-(2-HYDROXYETHYL)-1-PIPERAZINE ETHANESULFONIC ACID | S - 38 |
1s0y_B_14 | 1s0y | B | MLAMALONIC ACID | S - 34 |
1s0y_B_14 | 1s0y | B | MLAMALONIC ACID | I - 38 |
1s0y_B_14 | 1s0y | B | MLAMALONIC ACID | I - 39 |
1s0y_B_14 | 1s0y | B | MLAMALONIC ACID | N - 40 |
1st0_A_238 | 1st0 | A | GTG7-METHYL-GUANOSINE-5'-TRIPHOSPHATE-5'-GUANOSINE | L - 267 |
1st0_A_238 | 1st0 | A | GTG7-METHYL-GUANOSINE-5'-TRIPHOSPHATE-5'-GUANOSINE | H - 268 |
PDB Site Annotated loops in this subclass |
Loop | PDB | Chain | Site | Residue |
1gyx_A_14 | 1gyx | A | AC1EPE BINDING SITE FOR CHAIN B | S - 38 |
Clusters included in this Subclass |
CLUSTER: HE.6.32 |