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Information on SUBCLASS 6.1.2
Subclass Accession number: 403
Subclass: 6.1.2 PSSM
Type: HE alpha-beta
DB: ArchDB40

Image coordinates: Rasmol PDB Jmol PDB
Consensus coordinates: Rasmol PDB Jmol PDB

Conserved Annotation
EC : 1.1 (>75 %)  1.1.1 (>75 %)  
GO : GO:0004457 (>75 %)  GO:0004459 (>75 %)  GO:0016614 (>75 %)  GO:0016616 (>75 %)  
SCOP : 51734 (>75 %)  51735 (>75 %)  51848 (>75 %)  
Number of loops: 5

Average sequence ID (%) : 15.6 +/- 14.4
Average RMSD (Å) : 0.680 +/- 0.130

Consensus geometry
d (Å): 15 delta (°): 90-135 theta (°): 135-180 rho (°): 0-45
Consensus Sequence: phXXchcphX
(φψ)-conformation: aalbpaaabb
Pattern: [av][AIMT][ail][EKQRS][fhkr][FILY][GNR]x[DKN][DGP][DKNS][ehrs][il]x[IKV][aly][HL]x
Conservation:-0.057-0.191-1.0490.592-0.9060.8550.479-0.1941.1091.3060.787-1.3340.658-1.6010.924-0.7101.040-1.708
Loops included in this Subclass
LoopPDBChainStartEndSequenceSec StructRamachandran
1dbx_A_321dbx   A3249EAAEKLGIDPNRSFKTLLHHHHHHT--GGGBEEEEEaaaaaavbpaaaxbbbbb
1gyx_A_141gyx   A2744VIIRHLNSKDSSISIALQHHHHHHT--GGG-EEEEEaaaaaalbbaaabbbbbb
1s0y_B_141s0y   B2744VTNKSIGSDPKIINVLLVHHHHHH---GGG-EEEEEaaaaaavxxaaabbbbxb
1st0_A_2381st0   A251268AILQRYRMKGDHLRVYLHHHHHHH---GGGEEEEEEaaaaaavxxaaabbbbbb
2pth_*_712pth   -7693AMASFFRINPDEILVAHDHHHHHHT--GGGEEEEEEaaaaaalbxaaabbbxbx
PDB ligands within a cut-off distance of 6 Å in this subclass
LoopPDBChainLigandsResidue
1dbx_A_321dbx   A     MSESELENOMETHIONINE K - 46
1dbx_A_321dbx   A     MSESELENOMETHIONINE L - 48
1dbx_A_321dbx   A     MSESELENOMETHIONINE L - 49
1dbx_A_321dbx   A     MSESELENOMETHIONINE V - 50
1dbx_A_321dbx   A     MSESELENOMETHIONINE A - 51
1gyx_A_141gyx   A     EPE4-(2-HYDROXYETHYL)-1-PIPERAZINE ETHANESULFONIC ACID S - 34
1gyx_A_141gyx   A     EPE4-(2-HYDROXYETHYL)-1-PIPERAZINE ETHANESULFONIC ACID S - 38
1s0y_B_141s0y   B     MLAMALONIC ACID S - 34
1s0y_B_141s0y   B     MLAMALONIC ACID I - 38
1s0y_B_141s0y   B     MLAMALONIC ACID I - 39
1s0y_B_141s0y   B     MLAMALONIC ACID N - 40
1st0_A_2381st0   A     GTG7-METHYL-GUANOSINE-5'-TRIPHOSPHATE-5'-GUANOSINE L - 267
1st0_A_2381st0   A     GTG7-METHYL-GUANOSINE-5'-TRIPHOSPHATE-5'-GUANOSINE H - 268
PDB Site Annotated loops in this subclass
LoopPDBChainSiteResidue
1gyx_A_141gyx   A AC1EPE BINDING SITE FOR CHAIN BS - 38

Clusters included in this Subclass
CLUSTER: HE.6.32