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Information on SUBCLASS 5.29.1
Subclass Accession number: 4033
Subclass: 5.29.1 PSSM
Type: AR beta-beta link
DB: ArchDB95

Image coordinates: Rasmol PDB Jmol PDB
Consensus coordinates: Rasmol PDB Jmol PDB
Number of loops: 6

Average sequence ID (%) : 39.4 +/- 25.3
Average RMSD (Å) : 0.333 +/- 0.121

Consensus geometry
d (Å): 11 delta (°): 45-90 theta (°): 90-135 rho (°): 0-45
Consensus Sequence: hpGcGcpXR
(φψ)-conformation: bpealapbb
Pattern: [kpt][ILV][ly][G][DEKN][G][ADGKN][ANQ][itv][r][dgv]
Conservation:-0.7370.338-0.3111.903-0.1781.903-0.841-0.412-0.684-0.225-0.757
Loops included in this Subclass
LoopPDBChainStartEndSequenceSec StructRamachandran
1i24_A_2531i24   A254264TVYGKGGQTRGEEETTS--EEExxxeavapbbx
1kew_A_2211kew   A222232PIYGKGDQIRDEEETTS--EEEwbxeavaxbbb
1oc2_A_2161oc2   A216226KLYGEGKNVRDEEETTS--EEEbbxeavaxbbb
1orr_A_2271orr   A228238TISGNGKQVRDEEESSS--EEEbbxeavapbbx
1qyc_A_1761qyc   A178188VILGDGNARVVEEETTS--EEEbbxeavaxxbb
1r6d_A_2051r6d   A206216PLYGDGANVREEEETTS--EEEwxxeavapbbb
PDB ligands within a cut-off distance of 6 Å in this subclass
LoopPDBChainLigandsResidue
1i24_A_2531i24   A     UPGURIDINE-5'-DIPHOSPHATE-GLUCOSE T - 254
1i24_A_2531i24   A     UPGURIDINE-5'-DIPHOSPHATE-GLUCOSE V - 255
1i24_A_2531i24   A     UPGURIDINE-5'-DIPHOSPHATE-GLUCOSE Y - 256
1i24_A_2531i24   A     UPGURIDINE-5'-DIPHOSPHATE-GLUCOSE G - 257
1i24_A_2531i24   A     UPGURIDINE-5'-DIPHOSPHATE-GLUCOSE G - 259
1i24_A_2531i24   A     UPGURIDINE-5'-DIPHOSPHATE-GLUCOSE Q - 261
1i24_A_2531i24   A     UPGURIDINE-5'-DIPHOSPHATE-GLUCOSE T - 262
1i24_A_2531i24   A     UPGURIDINE-5'-DIPHOSPHATE-GLUCOSE R - 263
1i24_A_2531i24   A     UPGURIDINE-5'-DIPHOSPHATE-GLUCOSE G - 264
1i24_A_2531i24   A     UPGURIDINE-5'-DIPHOSPHATE-GLUCOSE Y - 265
1i24_A_2531i24   A     NADNICOTINAMIDE-ADENINE-DINUCLEOTIDE L - 266
1kew_A_2211kew   A     TYDTHYMIDINE-5'- DIPHOSPHATE P - 222
1kew_A_2211kew   A     TYDTHYMIDINE-5'- DIPHOSPHATE I - 223
1kew_A_2211kew   A     TYDTHYMIDINE-5'- DIPHOSPHATE Y - 224
1kew_A_2211kew   A     TYDTHYMIDINE-5'- DIPHOSPHATE G - 225
1kew_A_2211kew   A     GOLGLYCEROL G - 225
1kew_A_2211kew   A     GOLGLYCEROL K - 226
1kew_A_2211kew   A     TYDTHYMIDINE-5'- DIPHOSPHATE G - 227
1kew_A_2211kew   A     GOLGLYCEROL D - 228
1kew_A_2211kew   A     TYDTHYMIDINE-5'- DIPHOSPHATE Q - 229
1kew_A_2211kew   A     TYDTHYMIDINE-5'- DIPHOSPHATE I - 230
1kew_A_2211kew   A     TYDTHYMIDINE-5'- DIPHOSPHATE R - 231
1kew_A_2211kew   A     TYDTHYMIDINE-5'- DIPHOSPHATE W - 233
1kew_A_2211kew   A     NADNICOTINAMIDE-ADENINE-DINUCLEOTIDE W - 233
1oc2_A_2161oc2   A     TDXTHYMIDINE-5'-DIPHOSPHO-BETA-D-XYLOSE K - 216
1oc2_A_2161oc2   A     TDXTHYMIDINE-5'-DIPHOSPHO-BETA-D-XYLOSE L - 217
1oc2_A_2161oc2   A     TDXTHYMIDINE-5'-DIPHOSPHO-BETA-D-XYLOSE Y - 218
1oc2_A_2161oc2   A     TDXTHYMIDINE-5'-DIPHOSPHO-BETA-D-XYLOSE G - 221
1oc2_A_2161oc2   A     TDXTHYMIDINE-5'-DIPHOSPHO-BETA-D-XYLOSE N - 223
1oc2_A_2161oc2   A     TDXTHYMIDINE-5'-DIPHOSPHO-BETA-D-XYLOSE V - 224
1oc2_A_2161oc2   A     TDXTHYMIDINE-5'-DIPHOSPHO-BETA-D-XYLOSE R - 225
1orr_A_2271orr   A     CDPCYTIDINE-5'-DIPHOSPHATE T - 228
1orr_A_2271orr   A     CDPCYTIDINE-5'-DIPHOSPHATE I - 229
1orr_A_2271orr   A     CDPCYTIDINE-5'-DIPHOSPHATE S - 230
1orr_A_2271orr   A     CDPCYTIDINE-5'-DIPHOSPHATE G - 231
1orr_A_2271orr   A     CDPCYTIDINE-5'-DIPHOSPHATE Q - 235
1orr_A_2271orr   A     CDPCYTIDINE-5'-DIPHOSPHATE R - 237
1r6d_A_2051r6d   A     DAU2'DEOXY-THYMIDINE-5'-DIPHOSPHO-ALPHA-D-GLUCOSE P - 206
1r6d_A_2051r6d   A     DAU2'DEOXY-THYMIDINE-5'-DIPHOSPHO-ALPHA-D-GLUCOSE L - 207
1r6d_A_2051r6d   A     DAU2'DEOXY-THYMIDINE-5'-DIPHOSPHO-ALPHA-D-GLUCOSE Y - 208
1r6d_A_2051r6d   A     DAU2'DEOXY-THYMIDINE-5'-DIPHOSPHO-ALPHA-D-GLUCOSE G - 209
1r6d_A_2051r6d   A     DAU2'DEOXY-THYMIDINE-5'-DIPHOSPHO-ALPHA-D-GLUCOSE N - 213
1r6d_A_2051r6d   A     DAU2'DEOXY-THYMIDINE-5'-DIPHOSPHO-ALPHA-D-GLUCOSE V - 214
1r6d_A_2051r6d   A     DAU2'DEOXY-THYMIDINE-5'-DIPHOSPHO-ALPHA-D-GLUCOSE R - 215
1r6d_A_2051r6d   A     DAU2'DEOXY-THYMIDINE-5'-DIPHOSPHO-ALPHA-D-GLUCOSE E - 216
1r6d_A_2051r6d   A     DAU2'DEOXY-THYMIDINE-5'-DIPHOSPHO-ALPHA-D-GLUCOSE W - 217

Clusters included in this Subclass
CLUSTER: AR.4.100