Information on SUBCLASS 6.1.3 |
Subclass Accession number: 404
Subclass: 6.1.3 Type: HE alpha-beta DB: ArchDB40 Image coordinates: Consensus coordinates: Conserved Annotation GO : GO:0005200 (>75 %) SCOP : 53066 (>75 %) 53067 (>75 %) 53068 (>75 %) |
Number of loops: 4 Average sequence ID (%) : 9.7 +/- 14.5 Average RMSD (Å) : 1.725 +/- 0.320 Consensus geometry
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Consensus Sequence: | hhXXpXpXXX |
(φψ)-conformation: | aalbpaaabb |
Pattern: | x | [EMQ] | x | [EKRY] | x | [ALMW] | x | x | x | x | [EFMY] | [KNS] | x | [GL] | x | x | [ADES] | x | [EN] | x | [HL] | x | x | x |
Conservation: | -1.421 | 1.131 | -0.201 | 0.396 | -1.105 | 0.080 | -0.789 | 0.001 | -0.078 | -0.552 | 0.159 | 1.574 | -0.789 | 0.427 | -0.145 | -0.947 | 0.633 | -0.425 | 3.068 | -0.394 | 0.876 | -0.552 | -0.947 | -1.000 |
Loops included in this Subclass |
Loop | PDB | Chain | Start | End | Sequence | Sec Struct | Ramachandran |
1aru_*_266 | 1aru | - | 270 | 292 | GQRYRAAMAKMSVLGFDRNALTD. | HHHHHHHHHHHHTTTS-GGGSEE. | aaaaaaaaaaaaaxvbbaaabbx. |
1dl5_A_281 | 1dl5 | A | 281 | 304 | PEIENLLTQWESCGYRSFEYLMLH | HHHHHHHHHHHHTTT--GGGSEEE | aaaaaaaaaaaaavlxxaaabxxb |
1k8k_A_86 | 1k8k | A | 88 | 111 | LMERFMEQVIFKYLRAEPEDHYFL | HHHHHHHHHHHTTT---GGG--EE | aaaaaaaaaaaaaalbxaaabxbb |
1qz5_A_79 | 1qz5 | A | 81 | 104 | DMEKIWHHTFYNELRVAPEEHPTL | HHHHHHHHHHHTTS---GGGS-EE | aaaaaaaaaaaaaalbxaaabpbx |
PDB ligands within a cut-off distance of 6 Å in this subclass |
Loop | PDB | Chain | Ligands | Residue |
1aru_*_266 | 1aru | * | HEMPROTOPORPHYRIN IX CONTAINING FE | Y - 273 |
1aru_*_266 | 1aru | * | CACALCIUM ION | Y - 273 |
1aru_*_266 | 1aru | * | HEMPROTOPORPHYRIN IX CONTAINING FE | M - 277 |
1aru_*_266 | 1aru | * | CACALCIUM ION | M - 277 |
1aru_*_266 | 1aru | * | HEMPROTOPORPHYRIN IX CONTAINING FE | M - 280 |
1aru_*_266 | 1aru | * | CACALCIUM ION | M - 280 |
1dl5_A_281 | 1dl5 | A | CDCADMIUM ION | P - 281 |
1dl5_A_281 | 1dl5 | A | CDCADMIUM ION | E - 284 |
1dl5_A_281 | 1dl5 | A | CDCADMIUM ION | N - 285 |
Clusters included in this Subclass |
CLUSTER: HE.10.1 |