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Information on SUBCLASS 6.1.3
Subclass Accession number: 404
Subclass: 6.1.3 PSSM
Type: HE alpha-beta
DB: ArchDB40

Image coordinates: Rasmol PDB Jmol PDB
Consensus coordinates: Rasmol PDB Jmol PDB

Conserved Annotation
GO : GO:0005200 (>75 %)  
SCOP : 53066 (>75 %)  53067 (>75 %)  53068 (>75 %)  
Number of loops: 4

Average sequence ID (%) : 9.7 +/- 14.5
Average RMSD (Å) : 1.725 +/- 0.320

Consensus geometry
d (Å): 13 delta (°): 90-135 theta (°): 135-180 rho (°): 0-45
Consensus Sequence: hhXXpXpXXX
(φψ)-conformation: aalbpaaabb
Pattern: x[EMQ]x[EKRY]x[ALMW]xxxx[EFMY][KNS]x[GL]xx[ADES]x[EN]x[HL]xxx
Conservation:-1.4211.131-0.2010.396-1.1050.080-0.7890.001-0.078-0.5520.1591.574-0.7890.427-0.145-0.9470.633-0.4253.068-0.3940.876-0.552-0.947-1.000
Loops included in this Subclass
LoopPDBChainStartEndSequenceSec StructRamachandran
1aru_*_2661aru   -270292GQRYRAAMAKMSVLGFDRNALTD.HHHHHHHHHHHHTTTS-GGGSEE.aaaaaaaaaaaaaxvbbaaabbx.
1dl5_A_2811dl5   A281304PEIENLLTQWESCGYRSFEYLMLHHHHHHHHHHHHHTTT--GGGSEEEaaaaaaaaaaaaavlxxaaabxxb
1k8k_A_861k8k   A88111LMERFMEQVIFKYLRAEPEDHYFLHHHHHHHHHHHTTT---GGG--EEaaaaaaaaaaaaaalbxaaabxbb
1qz5_A_791qz5   A81104DMEKIWHHTFYNELRVAPEEHPTLHHHHHHHHHHHTTS---GGGS-EEaaaaaaaaaaaaaalbxaaabpbx
PDB ligands within a cut-off distance of 6 Å in this subclass
LoopPDBChainLigandsResidue
1aru_*_2661aru   *     HEMPROTOPORPHYRIN IX CONTAINING FE Y - 273
1aru_*_2661aru   *     CACALCIUM ION Y - 273
1aru_*_2661aru   *     HEMPROTOPORPHYRIN IX CONTAINING FE M - 277
1aru_*_2661aru   *     CACALCIUM ION M - 277
1aru_*_2661aru   *     HEMPROTOPORPHYRIN IX CONTAINING FE M - 280
1aru_*_2661aru   *     CACALCIUM ION M - 280
1dl5_A_2811dl5   A     CDCADMIUM ION P - 281
1dl5_A_2811dl5   A     CDCADMIUM ION E - 284
1dl5_A_2811dl5   A     CDCADMIUM ION N - 285

Clusters included in this Subclass
CLUSTER: HE.10.1