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Information on SUBCLASS 5.40.1
Subclass Accession number: 4044
Subclass: 5.40.1 PSSM
Type: AR beta-beta link
DB: ArchDB95

Image coordinates: Rasmol PDB Jmol PDB
Consensus coordinates: Rasmol PDB Jmol PDB
Number of loops: 4

Average sequence ID (%) : 8.8 +/- 9.1
Average RMSD (Å) : 1.125 +/- 0.330

Consensus geometry
d (Å): 9 delta (°): 45-90 theta (°): 135-180 rho (°): 315-360
Consensus Sequence: XphhcXXXX
(φψ)-conformation: bbppgpabb
Pattern: xxxx[ILP][AEP][GN]xx[ANQS]x[PQT]x[AGSV][ILV][FPT][GNSV]
Conservation:-0.995-0.450-0.9170.241-0.0280.1702.508-0.762-0.4500.095-0.3170.456-0.217-0.4502.335-0.456-0.762
Loops included in this Subclass
LoopPDBChainStartEndSequenceSec StructRamachandran
1hr6_B_361hr6   B3854ATEYIPNTSSATVGIFVEEEE-SS-SEEEEEEEEbbbxbxlbabbbbbbbb
1l4i_A_81l4i   A824RVIYPEGQKQVQLAVTNEEEEETT-SEEEEEEEEbbxbxpgxabbbbxbbx
1p2z_A_6641p2z   A668684LYPIPANATNVPISIPSEEEE-TT--EEEEEEEEbbxbppvxabbxbbbpp
1p9l_A_1801p9l   A183199HAVRLAGLVAHQEVLFGEEEE-TT--EEEEEEEEbbbbbpgxabbbbbbbb
PDB ligands within a cut-off distance of 6 Å in this subclass
LoopPDBChainLigandsResidue
1p9l_A_1801p9l   A     PDCPYRIDINE-2,6-DICARBOXYLIC ACID V - 191
1p9l_A_1801p9l   A     PDCPYRIDINE-2,6-DICARBOXYLIC ACID A - 192
1p9l_A_1801p9l   A     PG4TETRAETHYLENE GLYCOL E - 195
1p9l_A_1801p9l   A     PG4TETRAETHYLENE GLYCOL L - 197

Clusters included in this Subclass
CLUSTER: AR.4.177