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Information on SUBCLASS 6.2.2
Subclass Accession number: 406
Subclass: 6.2.2 PSSM
Type: HE alpha-beta
DB: ArchDB40

Image coordinates: Rasmol PDB Jmol PDB
Consensus coordinates: Rasmol PDB Jmol PDB
Number of loops: 12

Average sequence ID (%) : 14.1 +/- 14.9
Average RMSD (Å) : 0.967 +/- 0.264

Consensus geometry
d (Å): 13 delta (°): 90-135 theta (°): 135-180 rho (°): 315-360
Consensus Sequence: XXGhpXpphh
(φψ)-conformation: aagppaaabb
Pattern: [agiktv]x[acgkl][acfglv]xx[ailmv][aelm]x[aekr]x[GR][ilmvw][DKNPQRS]x[dehknr][CDEHKNR][cilmv][afilvy][filv]
Conservation:-0.798-0.864-1.041-0.654-1.232-0.8730.087-0.433-0.6010.051-0.5892.6260.6610.235-0.0290.6680.2321.226-0.4851.815
Loops included in this Subclass
LoopPDBChainStartEndSequenceSec StructRamachandran
1c1y_B_781c1y   B7998HDCLMKALKVRGLQPECCAVHHHHHHHHHTTT--GGGEEEGaaaaaaaaaavbbaaabbb
1edq_A_4201edq   A420439TVNGVNALLAQGVKPGKIVVHHHHHHHHHHHT--GGGEEEaaaaaaaaaaagxxaaaxbx
1fj2_A_811fj2   A91110IKALIDQEVKNGIPSNRIILHHHHHHHHHHTT--GGGEEEaaaaaaaaaaagbxaaabbb
1gd0_A_691gd0   A7796KLLCGLLAERLRISPDRVYIHHHHHHHHHHH---GGGEEEaaaaaaaaaaavbxaaabbb
1h6d_A_1191h6d   A119137AEKAKIVAAEYGVDPRKIY.HHHHHHHHHHTT--GGGEE.aaaaaaaaaaalxpaaabb.
1hfo_A_691hfo   A7796AKLFDHLNTKLGIPKNRMYIHHHHHHHHHHH---GGGEEEaaaaaaaaaaavxxaaabbb
1jlr_A_1711jlr   A173192VCKAIEVLLRLGVKEERIIFHHHHHHHHHHTT--GGGEEEaaaaaaaaaaagxxaaaxbx
1mww_A_721mww   A8099KMLFSELEYKLGIRAHDVEIHHHHHHHHHHH---GGGEEEaaaaaaaaaaavxpaaabbb
1s0y_A_141s0y   A2241AGLLRVISEATGEPRENIFFHHHHHHHHHHH---GGG-EEaaaaaaaaaaavxxaaabbb
1st0_A_2381st0   A246265HQGQEAILQRYRMKGDHLRVHHHHHHHHHHH---GGGEEEaaaaaaaaaaavxxaaabbb
2pth_*_712pth   -7190GKAVAAMASFFRINPDEILVHHHHHHHHHHHT--GGGEEEaaaaaaaaaaalbxaaabbb
8abp_*_1108abp   -118137GQELYKEMQKRGWDVKESAVHHHHHHHHHHHT--GGGEEEaaaaaaaaaaavpxaaabbb
PDB ligands within a cut-off distance of 6 Å in this subclass
LoopPDBChainLigandsResidue
1gd0_A_691gd0   A     CITCITRIC ACID N - 97
1gd0_A_691gd0   A     CITCITRIC ACID Y - 99
1h6d_A_1191h6d   A     NDPNADPH DIHYDRO-NICOTINAMIDE-ADENINE-DINUCLEOTIDE PHOSPHATE K - 121
1jlr_A_1711jlr   A     PO4PHOSPHATE ION G - 171
1jlr_A_1711jlr   A     PO4PHOSPHATE ION S - 172
1jlr_A_1711jlr   A     PO4PHOSPHATE ION V - 173
1mww_A_721mww   A     GLUGLUTAMIC ACID E - 98
1s0y_A_141s0y   A     MLAMALONIC ACID F - 40
1st0_A_2381st0   A     GTG7-METHYL-GUANOSINE-5'-TRIPHOSPHATE-5'-GUANOSINE L - 267
1st0_A_2381st0   A     GTG7-METHYL-GUANOSINE-5'-TRIPHOSPHATE-5'-GUANOSINE H - 268

Clusters included in this Subclass
CLUSTER: HE.7.2