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Information on SUBCLASS 6.2.3
Subclass Accession number: 407
Subclass: 6.2.3 PSSM
Type: HE alpha-beta
DB: ArchDB40

Image coordinates: Rasmol PDB Jmol PDB
Consensus coordinates: Rasmol PDB Jmol PDB

Conserved Annotation
SCOP : 51350 (>75 %)  
 Number of loops: 5

Average sequence ID (%) : 15.0 +/- 16.8
Average RMSD (Å) : 0.660 +/- 0.207

Consensus geometry
d (Å): 13 delta (°): 90-135 theta (°): 135-180 rho (°): 315-360
Consensus Sequence: XpGhcpXphX
(φψ)-conformation: aagppaaabb
Pattern: [pv][DEKN][afwy][ILVW][ael][ars][ANQS][AG][AFLV][DKNP][KPRS][AEGN][EKQR][ILV]x[ILV]
Conservation:-0.7380.536-0.618-0.042-1.210-0.827-0.1992.275-0.374-0.269-0.406-0.3710.8231.514-1.2581.163
Loops included in this Subclass
LoopPDBChainStartEndSequenceSec StructRamachandran
1edq_A_4201edq   A424439VNALLAQGVKPGKIVVHHHHHHHT--GGGEEEaaaaaaagxxaaaxbx
1jnd_A_2551jnd   A259274VEYWLSQGFPSNKINLHHHHHHTT--GGGEEEaaaaaaagxxaaabbx
1ofu_X_891ofu   X89104HEWLRRAGLNRERILLHHHHHHTT--TTSEEEaaaaaaavxxaaabbb
1qzm_A_5061qzm   A508523PKQIERNALKKGELTVHHHHHHTT--TTTEEEaaaaaaavbxaaabbb
3pro_C_1373pro   C141156VDFVALSGADSAQVRIHHHHHHHT--TTTEEEaaaaaaavxxaaabbx
PDB ligands within a cut-off distance of 6 Å in this subclass
LoopPDBChainLigandsResidue
1jnd_A_2551jnd   A     NAGN-ACETYL-D-GLUCOSAMINE F - 257
1jnd_A_2551jnd   A     NAGN-ACETYL-D-GLUCOSAMINE Q - 258
1jnd_A_2551jnd   A     NAGN-ACETYL-D-GLUCOSAMINE Y - 261

Clusters included in this Subclass
CLUSTER: HE.6.31