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Information on SUBCLASS 6.1.1
Subclass Accession number: 4086
Subclass: 6.1.1 PSSM
Type: AR beta-beta link
DB: ArchDB95

Image coordinates: Rasmol PDB Jmol PDB
Consensus coordinates: Rasmol PDB Jmol PDB
Number of loops: 17

Average sequence ID (%) : 14.8 +/- 21.7
Average RMSD (Å) : 0.776 +/- 0.365

Consensus geometry
d (Å): 11 delta (°): 45-90 theta (°): 135-180 rho (°): 90-135
Consensus Sequence: XpXpXpXphp
(φψ)-conformation: bbapaappbb
Pattern: [afilp][afiklv][HKNPST]x[CHKNQRST][acglmptv][adenqs]x[dehnps][aflmwy][knqrst][FILMVY]
Conservation:0.489-0.3941.355-1.0660.301-1.732-0.198-1.0040.0990.0380.2631.849
Loops included in this Subclass
LoopPDBChainStartEndSequenceSec StructRamachandran
1aoz_A_2131aoz   A218229IASTTALAALNFEEE--SS-EEEEbbbaxaaxbbbb
1cgt_*_4281cgt   -433444AVNRNLSTSASIEEE--SS--EEEbbbaxaabxbxb
1ciu_*_4281ciu   -433444AINRNLSTSYNIEEE--SS--EEEbbbaxaNbxbxx
1gw0_A_2241gw0   A229240ILNTSTENHFQVEEE--SS--EEExbbaxaNpbbbb
1gyc_A_1951gyc   A200211LVSISCDPNYTFEEE--SS--EEExbxaxaIxxbbb
1hfu_A_1941hfu   A199210LISLSCDPNWQFEEE--SS--EEExbxaxaIxbbxb
1iv8_A_6731iv8   A676687IIKTKGSVNYKLEEES-TT--EEEbbxabaabbbbb
1kcl_A_4281kcl   A433444AVNRNLNAPASIEEE--SS--EEEbbbaxaabxbxx
1ktb_A_3201ktb   A324335FFSRRTDMPFRYEEE--SSS-EEEbbbaxaabpbxb
1kv7_A_2231kv7   A235246LLNGCNARSLNFEEE--SS--EEExbxaxaNxxbbx
1kya_A_1951kya   A200211LVSLSCDPNYTFEEE--SS--EEExbxaxaNpbbxx
1mdb_A_3551mdb   A355365.KPMSPYDESRV.EESSTT-EEEE.bpabaaxbbbb
1oq1_A_371oq1   A3950LSHVQDEAHFVFEEESSTT--BEEbbbabaaxxbbb
1pam_A_4281pam   A433444AINRNMNTPASIEEE--SS--EEEbbbaxaabxbxx
1pm4_A_441pm4   A5061LHSTNVNADMTLEE-S-TT--EEExbbaxaaxbbbb
1qho_A_4291qho   A434445AINRNTQSSYSIEEE--TT--EEEbbbaxaabxbxb
1s2d_A_1121s2d   A116127PFTEHPEKEKKMEE-S-TTS--EEwbbabaappxbb
PDB ligands within a cut-off distance of 6 Å in this subclass
LoopPDBChainLigandsResidue
1gw0_A_2241gw0   A     NAGN-ACETYL-D-GLUCOSAMINE L - 227
1gw0_A_2241gw0   A     NAGN-ACETYL-D-GLUCOSAMINE S - 241
1ktb_A_3201ktb   A     CRYPROPANE-1,2,3-TRIOL S - 320
1ktb_A_3201ktb   A     CRYPROPANE-1,2,3-TRIOL A - 321
1ktb_A_3201ktb   A     NAGN-ACETYL-D-GLUCOSAMINE T - 336
1ktb_A_3201ktb   A     NAGN-ACETYL-D-GLUCOSAMINE T - 337
1kya_A_1951kya   A     XYD2,5-DIMETHYLANILINE D - 206
1kya_A_1951kya   A     NAGN-ACETYL-D-GLUCOSAMINE I - 213
1oq1_A_371oq1   A     MSESELENOMETHIONINE L - 39
1oq1_A_371oq1   A     MSESELENOMETHIONINE S - 40
1oq1_A_371oq1   A     GOLGLYCEROL S - 40
1oq1_A_371oq1   A     MSESELENOMETHIONINE H - 41
1oq1_A_371oq1   A     GOLGLYCEROL H - 41
1oq1_A_371oq1   A     GOLGLYCEROL V - 42
1oq1_A_371oq1   A     GOLGLYCEROL Q - 43
1oq1_A_371oq1   A     MSESELENOMETHIONINE D - 44
1oq1_A_371oq1   A     GOLGLYCEROL D - 44
1oq1_A_371oq1   A     MSESELENOMETHIONINE E - 45
1oq1_A_371oq1   A     MSESELENOMETHIONINE A - 46
1oq1_A_371oq1   A     MSESELENOMETHIONINE H - 47
1oq1_A_371oq1   A     MSESELENOMETHIONINE F - 48
1oq1_A_371oq1   A     MSESELENOMETHIONINE V - 49
1oq1_A_371oq1   A     MSESELENOMETHIONINE F - 50
1oq1_A_371oq1   A     MSESELENOMETHIONINE W - 51
1s2d_A_1121s2d   A     AR42-AMINO-5-(3-FLUORO-3,4-DIHYDROXY-5-HYDROXYMETHYL-TETRAHYDRO-FURAN-2-YLOXY)-5-HYDROXY-PENTANOIC ACID V - 112

Clusters included in this Subclass
CLUSTER: AR.5.31
CLUSTER: AR.6.21
CLUSTER: AR.6.91
CLUSTER: AR.7.78