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Information on SUBCLASS 0.1.41
Subclass Accession number: 41
Subclass: 0.1.41 PSSM
Type: HE alpha-beta
DB: ArchDB40

Image coordinates: Rasmol PDB Jmol PDB
Consensus coordinates: Rasmol PDB Jmol PDB

Conserved Annotation
GO : GO:0003677 (>50 %)  GO:0003700 (>50 %)  GO:0003707 (>50 %)  GO:0004872 (>50 %)  GO:0004879 (>50 %)  GO:0016853 (>75 %)  
SCOP : 48507 (>50 %)  48508 (>50 %)  48509 (>50 %)  
 Number of loops: 3

Average sequence ID (%) : 4.2 +/- 8.4
Average RMSD (Å) : 0.400 +/- 0.100

Consensus geometry
d (Å): 7 delta (°): 45-90 theta (°): 45-90 rho (°): 135-180
Consensus Sequence: phhp
(φψ)-conformation: aabb
Pattern: [KLT]x[FIL][ANR][KST][ILV][FLM][NS]
Conservation:-1.033-1.2460.245-0.714-0.1810.8840.3511.695
Loops included in this Subclass
LoopPDBChainStartEndSequenceSec StructRamachandran
1acc_*_6331acc   -633640KDIRKILSHHHHHTEEaaaaaaxa
1nrl_A_2691nrl   A286293LRFNTVFNHHHHHTEEaaaaaaxb
2prg_A_3112prg   A328335TMLASLMNHHHHHTEEaaaaaabb
PDB ligands within a cut-off distance of 6 Å in this subclass
LoopPDBChainLigandsResidue
1nrl_A_2691nrl   A     SRL[2-(3,5-DI-TERT-BUTYL-4-HYDROXY-PHENYL)-1-(DIETHOXY-PHOSPHORYL)-VINYL]-PHOSPHONIC ACID DIETHLYL ESTER F - 281
1nrl_A_2691nrl   A     SRL[2-(3,5-DI-TERT-BUTYL-4-HYDROXY-PHENYL)-1-(DIETHOXY-PHOSPHORYL)-VINYL]-PHOSPHONIC ACID DIETHLYL ESTER C - 284
1nrl_A_2691nrl   A     SRL[2-(3,5-DI-TERT-BUTYL-4-HYDROXY-PHENYL)-1-(DIETHOXY-PHOSPHORYL)-VINYL]-PHOSPHONIC ACID DIETHLYL ESTER Q - 285
1nrl_A_2691nrl   A     SRL[2-(3,5-DI-TERT-BUTYL-4-HYDROXY-PHENYL)-1-(DIETHOXY-PHOSPHORYL)-VINYL]-PHOSPHONIC ACID DIETHLYL ESTER F - 288
2prg_A_3112prg   A     BRL2,4-THIAZOLIDIINEDIONE, 5-[[4-[2-(METHYL-2-PYRIDINYLAMINO)ETHOXY]PHENYL]METHYL]-(9CL) H - 323
2prg_A_3112prg   A     BRL2,4-THIAZOLIDIINEDIONE, 5-[[4-[2-(METHYL-2-PYRIDINYLAMINO)ETHOXY]PHENYL]METHYL]-(9CL) I - 326
2prg_A_3112prg   A     BRL2,4-THIAZOLIDIINEDIONE, 5-[[4-[2-(METHYL-2-PYRIDINYLAMINO)ETHOXY]PHENYL]METHYL]-(9CL) Y - 327
2prg_A_3112prg   A     BRL2,4-THIAZOLIDIINEDIONE, 5-[[4-[2-(METHYL-2-PYRIDINYLAMINO)ETHOXY]PHENYL]METHYL]-(9CL) L - 330
2prg_A_3112prg   A     BRL2,4-THIAZOLIDIINEDIONE, 5-[[4-[2-(METHYL-2-PYRIDINYLAMINO)ETHOXY]PHENYL]METHYL]-(9CL) L - 333
2prg_A_3112prg   A     BRL2,4-THIAZOLIDIINEDIONE, 5-[[4-[2-(METHYL-2-PYRIDINYLAMINO)ETHOXY]PHENYL]METHYL]-(9CL) M - 334
PDB Site Annotated loops in this subclass
LoopPDBChainSiteResidue
2prg_A_3112prg   A CA1RESIDUES INVOLVED IN BINDING THE LXXLL COACTIVATOR HELIX.L - 311
2prg_A_3112prg   A CA1RESIDUES INVOLVED IN BINDING THE LXXLL COACTIVATOR HELIX.Q - 314
2prg_A_3112prg   A CA1RESIDUES INVOLVED IN BINDING THE LXXLL COACTIVATOR HELIX.V - 315
2prg_A_3112prg   A CA1RESIDUES INVOLVED IN BINDING THE LXXLL COACTIVATOR HELIX.L - 318
2prg_A_3112prg   A LB1THESE RESIDUES ARE INVOLVED IN LIGAND BINDING.H - 323
2prg_A_3112prg   A LB1THESE RESIDUES ARE INVOLVED IN LIGAND BINDING.Y - 327
2prg_A_3112prg   A LB1THESE RESIDUES ARE INVOLVED IN LIGAND BINDING.L - 330

Clusters included in this Subclass
CLUSTER: HE.2.76