ArchDB - Biological DataBase of Protein Loops

Information on SUBCLASS 6.2.6

Subclass Accession number: 410
Subclass: 6.2.6

Type: HE alpha-beta
DB: ArchDB40

Image coordinates:

Consensus coordinates:

Conserved Annotation
GO : GO:0016301 (>75 %) GO:0016772 (>75 %)
SCOP : 53612 (>75 %) 53613 (>75 %) 53614 (>75 %) 53719 (>75 %) 53720 (>75 %) 53721 (>75 %)

Number of loops: 4

Average sequence ID (%) : 20.5 +/- 18.3
Average RMSD (Å) : 1.075 +/- 0.222

Consensus geometry

d (Å): 13

delta (°): 90-135

theta (°): 135-180

rho (°): 180-225

Consensus Sequence:	pXXhXXXhhX
(φψ)-conformation:	aagppaaabb

Pattern:	x	[LPV]	[AG]	[ADE]	[ACM]	[AIV]	x	[EGKQ]	x	[L]	x	[ADKQ]	[AEF]	[GQ]	[FLV]	[DKP]	x	[ADT]	x	[FI]	[ART]	x
Conservation:	-1.648	-0.560	1.218	-0.202	0.181	0.273	-0.465	-0.339	-0.352	2.900	0.063	-0.683	-0.888	1.348	0.228	0.365	-1.303	-0.182	-0.890	1.278	-0.194	-0.145

Loops included in this Subclass

Loop	PDB	Chain	Start	End	Sequence	Sec Struct	Ramachandran
1ez0_A_178	1ez0	A	183	204	IVAECIEQALKQEQLPQAIFTL	HHHHHHHHHHHHHT--GGGEEE	aaaaaaaaaaaaalbpaaabbb
1j5v_A_59	1j5v	A	59	80	PLGDAAAGHLRKFGVKTDYIAR	HHHHHHHHHHHHTT-B-TTEEE	aaaaaaaaaaaaagxxaaaxxb
1ky8_A_198	1ky8	A	198	219	LPAAMAVKALLDAGFPPDAIAL	HHHHHHHHHHHHHT--TTSEEE	aaaaaaaaaaaaagppaaabbb
1v1a_A_60	1v1a	A	60	81	ELGAMVEERLRAEGVDLTHFRR	HHHHHHHHHHHHHT-B-TTEEE	aaaaaaaaaaaaagxxaaabbx

PDB ligands within a cut-off distance of 6 Å in this subclass

Loop	PDB	Chain	Ligands	Residue
1j5v_A_59	1j5v	A	NINICKEL (II) ION	A - 63
1j5v_A_59	1j5v	A	NI3NICKEL (II) ION, 3 WATERS COORDINATED	A - 63
1j5v_A_59	1j5v	A	MSESELENOMETHIONINE	A - 64
1j5v_A_59	1j5v	A	NINICKEL (II) ION	G - 66
1j5v_A_59	1j5v	A	NI3NICKEL (II) ION, 3 WATERS COORDINATED	G - 66
1j5v_A_59	1j5v	A	NINICKEL (II) ION	H - 67
1j5v_A_59	1j5v	A	NI3NICKEL (II) ION, 3 WATERS COORDINATED	H - 67
1j5v_A_59	1j5v	A	NINICKEL (II) ION	L - 68
1j5v_A_59	1j5v	A	NI3NICKEL (II) ION, 3 WATERS COORDINATED	L - 68
1j5v_A_59	1j5v	A	NINICKEL (II) ION	K - 70
1j5v_A_59	1j5v	A	NI3NICKEL (II) ION, 3 WATERS COORDINATED	K - 70
1j5v_A_59	1j5v	A	NINICKEL (II) ION	F - 71
1j5v_A_59	1j5v	A	NI3NICKEL (II) ION, 3 WATERS COORDINATED	F - 71
1j5v_A_59	1j5v	A	2OFFERROUS ION, 2 WATERS COORDINATED	K - 74

Clusters included in this Subclass

CLUSTER: HE.5.158

CLUSTER: HE.6.109