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Information on SUBCLASS 6.3.1
Subclass Accession number: 411
Subclass: 6.3.1 PSSM
Type: HE alpha-beta
DB: ArchDB40

Image coordinates: Rasmol PDB Jmol PDB
Consensus coordinates: Rasmol PDB Jmol PDB

Conserved Annotation
GO : GO:0005509 (>75 %)  GO:0005509 (>75 %)  GO:0030151 (>75 %)  GO:0046914 (>75 %)  
SCOP : 47472 (>75 %)  47472 (>75 %)  47473 (>75 %)  47473 (>75 %)  47502 (>50 %)  47502 (>75 %)  50684 (>50 %)  50692 (>50 %)  50696 (>75 %)  
 Number of loops: 19

Average sequence ID (%) : 28.8 +/- 22.4
Average RMSD (Å) : 0.411 +/- 0.228

Consensus geometry
d (Å): 9 delta (°): 90-135 theta (°): 45-90 rho (°): 45-90
Consensus Sequence: XhDXcXccXh
(φψ)-conformation: aapaalalbb
Pattern: [fikl][degknqrst]x[ACFILMVY][D][AFIKLMT][DGKNT][egknqrt][DNQST][ADGKN]x[ILV]x
Conservation:-0.337-0.706-0.965-0.3242.561-0.6000.216-0.6530.4520.232-0.8590.983-1.000
Loops included in this Subclass
LoopPDBChainStartEndSequenceSec StructRamachandran
1aui_B_1251aui   B136148IINADKDGDGRISHHHH-TTSSSSEEaaaaxaavavbbx
1aui_B_161aui   B2637FKKLDLDNSGSL.HHHH-TT--SEE.aaaaxaalavbx.
1aui_B_541aui   B5870IDIFDTDGNGEVDHHHH-TT-SSSEEaaaaxaalavbbx
1aui_B_871aui   B95106FRIYDMDKDGYI.HHHH-TT-SSEE.aaaaxaalavbx.
1eg3_A_1711eg3   A183195LNVYDTGRTGRIRHHHH-TT--SEEEaaaabaalavbbx
1ig5_A_461ig5   A5061FEELDKNGDGEV.HHHH-TT-SSEE.aaaaxaalavbb.
1j55_A_531j55   A5870LKDLDANGDAQVDHHHH-SSSSSSEEaaaaxaavavbbx
1m45_A_111m45   A1123FTLFDKKGQGAIAHHHH-TT--SEEEaaaabaalavbbp
1mr8_A_511mr8   A5566FKELDINTDGAV.HHHH-TT-SSEE.aaaaxaalavbb.
1s6c_A_1231s6c   A131143FNLYDINKDGYINHHHH-TT-SS-EEaaaaxaalavbbb
1s6c_A_1721s6c   A179190FQKMDKNKDGIV.HHHH-TT-SSEE.aaaaxaalavbb.
1s6c_A_881s6c   A95107FNAFDTTQTGSVKHHHH-TT-SS-EEaaaaxaalavbxx
1sra_*_2491sra   -253265FETCDLDNDKYIAHHHH-TT-SSSEEaaaaxaavavbbx
2cbl_A_2182cbl   A225237KSTIDLTCNDYISHHHH-TT-SSEEEaaaaxaalaUbbx
2sas_*_42sas   -1526DFFLDMNHDGSI.HHHT-TT-SSEE.aaaaxaalavbx.
2sas_*_482sas   -6678KGRADINKDDVVSHHHH-TT-SS-EEaaaaxaalalbbx
2scp_A_1302scp   A134145FDAIDTNNDGLL.HHHH-TT-SSEE.aaaaxaavavbb.
2scp_A_22scp   A1223FNRIDFDKDGAI.HHHH-TT-SSEE.aaaaxaalavbx.
2scp_A_952scp   A100112FRAVDTNEDNNISHHHH-TT-SSSEEaaaaxaalavbbx
PDB ligands within a cut-off distance of 6 Å in this subclass
LoopPDBChainLigandsResidue
1aui_B_161aui   B     CACALCIUM ION L - 29
1aui_B_161aui   B     CACALCIUM ION D - 30
1aui_B_161aui   B     CACALCIUM ION L - 31
1aui_B_161aui   B     CACALCIUM ION D - 32
1aui_B_161aui   B     CACALCIUM ION N - 33
1aui_B_161aui   B     CACALCIUM ION S - 34
1aui_B_161aui   B     CACALCIUM ION G - 35
1aui_B_161aui   B     CACALCIUM ION S - 36
1aui_B_161aui   B     CACALCIUM ION L - 37
1aui_B_541aui   B     CACALCIUM ION F - 61
1aui_B_541aui   B     CACALCIUM ION D - 62
1aui_B_541aui   B     CACALCIUM ION T - 63
1aui_B_541aui   B     CACALCIUM ION D - 64
1aui_B_541aui   B     CACALCIUM ION G - 65
1aui_B_541aui   B     CACALCIUM ION N - 66
1aui_B_541aui   B     CACALCIUM ION G - 67
1aui_B_541aui   B     CACALCIUM ION E - 68
1aui_B_541aui   B     CACALCIUM ION V - 69
1aui_B_541aui   B     CACALCIUM ION D - 70
1aui_B_871aui   B     CACALCIUM ION Y - 98
1aui_B_871aui   B     CACALCIUM ION D - 99
1aui_B_871aui   B     CACALCIUM ION M - 100
1aui_B_871aui   B     CACALCIUM ION D - 101
1aui_B_871aui   B     CACALCIUM ION K - 102
1aui_B_871aui   B     CACALCIUM ION D - 103
1aui_B_871aui   B     CACALCIUM ION G - 104
1aui_B_871aui   B     CACALCIUM ION Y - 105
1aui_B_871aui   B     CACALCIUM ION I - 106
1aui_B_1251aui   B     CACALCIUM ION A - 139
1aui_B_1251aui   B     CACALCIUM ION D - 140
1aui_B_1251aui   B     CACALCIUM ION K - 141
1aui_B_1251aui   B     CACALCIUM ION D - 142
1aui_B_1251aui   B     CACALCIUM ION G - 143
1aui_B_1251aui   B     CACALCIUM ION D - 144
1aui_B_1251aui   B     CACALCIUM ION G - 145
1aui_B_1251aui   B     CACALCIUM ION R - 146
1aui_B_1251aui   B     CACALCIUM ION I - 147
1aui_B_1251aui   B     CACALCIUM ION S - 148
1ig5_A_461ig5   A     MGMAGNESIUM ION L - 53
1ig5_A_461ig5   A     MGMAGNESIUM ION D - 54
1ig5_A_461ig5   A     MGMAGNESIUM ION K - 55
1ig5_A_461ig5   A     MGMAGNESIUM ION N - 56
1ig5_A_461ig5   A     MGMAGNESIUM ION G - 57
1ig5_A_461ig5   A     MGMAGNESIUM ION D - 58
1ig5_A_461ig5   A     MGMAGNESIUM ION G - 59
1ig5_A_461ig5   A     MGMAGNESIUM ION E - 60
1ig5_A_461ig5   A     MGMAGNESIUM ION V - 61
1j55_A_531j55   A     CACALCIUM ION L - 61
1j55_A_531j55   A     CACALCIUM ION A - 63
1j55_A_531j55   A     CACALCIUM ION N - 64
1j55_A_531j55   A     CACALCIUM ION D - 66
1j55_A_531j55   A     CACALCIUM ION A - 67
1j55_A_531j55   A     CACALCIUM ION Q - 68
1mr8_A_511mr8   A     OC1CALCIUM ION, 1 WATER COORDINATED L - 58
1mr8_A_511mr8   A     OC1CALCIUM ION, 1 WATER COORDINATED D - 59
1mr8_A_511mr8   A     OC1CALCIUM ION, 1 WATER COORDINATED I - 60
1mr8_A_511mr8   A     OC1CALCIUM ION, 1 WATER COORDINATED N - 61
1mr8_A_511mr8   A     OC1CALCIUM ION, 1 WATER COORDINATED T - 62
1mr8_A_511mr8   A     OC1CALCIUM ION, 1 WATER COORDINATED D - 63
1mr8_A_511mr8   A     OC1CALCIUM ION, 1 WATER COORDINATED G - 64
1mr8_A_511mr8   A     OC1CALCIUM ION, 1 WATER COORDINATED A - 65
1mr8_A_511mr8   A     OC1CALCIUM ION, 1 WATER COORDINATED V - 66
1s6c_A_1231s6c   A     CASS-(DIMETHYLARSENIC)CYSTEINE L - 127
1s6c_A_1231s6c   A     CACALCIUM ION L - 127
1s6c_A_1231s6c   A     CASS-(DIMETHYLARSENIC)CYSTEINE T - 130
1s6c_A_1231s6c   A     CACALCIUM ION T - 130
1s6c_A_1231s6c   A     CASS-(DIMETHYLARSENIC)CYSTEINE Y - 134
1s6c_A_1231s6c   A     CACALCIUM ION Y - 134
1s6c_A_1231s6c   A     CACALCIUM ION D - 135
1s6c_A_1231s6c   A     CACALCIUM ION I - 136
1s6c_A_1231s6c   A     CACALCIUM ION N - 137
1s6c_A_1231s6c   A     CACALCIUM ION K - 138
1s6c_A_1231s6c   A     CACALCIUM ION D - 139
1s6c_A_1231s6c   A     CACALCIUM ION G - 140
1s6c_A_1231s6c   A     CACALCIUM ION Y - 141
1s6c_A_1231s6c   A     CACALCIUM ION I - 142
1s6c_A_1231s6c   A     CACALCIUM ION N - 143
1s6c_A_1721s6c   A     CASS-(DIMETHYLARSENIC)CYSTEINE M - 182
1s6c_A_1721s6c   A     CACALCIUM ION M - 182
1s6c_A_1721s6c   A     CACALCIUM ION D - 183
1s6c_A_1721s6c   A     CACALCIUM ION K - 184
1s6c_A_1721s6c   A     CACALCIUM ION N - 185
1s6c_A_1721s6c   A     CACALCIUM ION K - 186
1s6c_A_1721s6c   A     CACALCIUM ION D - 187
1s6c_A_1721s6c   A     CACALCIUM ION G - 188
1s6c_A_1721s6c   A     CACALCIUM ION I - 189
1s6c_A_1721s6c   A     CACALCIUM ION V - 190
1sra_*_2491sra   *     CACALCIUM ION C - 256
1sra_*_2491sra   *     CACALCIUM ION D - 257
1sra_*_2491sra   *     CACALCIUM ION L - 258
1sra_*_2491sra   *     CACALCIUM ION D - 259
1sra_*_2491sra   *     CACALCIUM ION N - 260
1sra_*_2491sra   *     CACALCIUM ION D - 261
1sra_*_2491sra   *     CACALCIUM ION K - 262
1sra_*_2491sra   *     CACALCIUM ION Y - 263
1sra_*_2491sra   *     CACALCIUM ION I - 264
1sra_*_2491sra   *     CACALCIUM ION A - 265
2cbl_A_2182cbl   A     CACALCIUM ION I - 228
2cbl_A_2182cbl   A     CACALCIUM ION D - 229
2cbl_A_2182cbl   A     CACALCIUM ION L - 230
2cbl_A_2182cbl   A     CACALCIUM ION T - 231
2cbl_A_2182cbl   A     CACALCIUM ION C - 232
2cbl_A_2182cbl   A     CACALCIUM ION N - 233
2cbl_A_2182cbl   A     CACALCIUM ION D - 234
2cbl_A_2182cbl   A     CACALCIUM ION Y - 235
2cbl_A_2182cbl   A     CACALCIUM ION I - 236
2cbl_A_2182cbl   A     CACALCIUM ION S - 237
2sas_*_42sas   *     CACALCIUM ION L - 18
2sas_*_42sas   *     CACALCIUM ION D - 19
2sas_*_42sas   *     CACALCIUM ION M - 20
2sas_*_42sas   *     CACALCIUM ION N - 21
2sas_*_42sas   *     CACALCIUM ION H - 22
2sas_*_42sas   *     CACALCIUM ION D - 23
2sas_*_42sas   *     CACALCIUM ION G - 24
2sas_*_42sas   *     CACALCIUM ION S - 25
2sas_*_42sas   *     CACALCIUM ION I - 26
2sas_*_482sas   *     CACALCIUM ION A - 69
2sas_*_482sas   *     CACALCIUM ION I - 71
2sas_*_482sas   *     CACALCIUM ION N - 72
2sas_*_482sas   *     CACALCIUM ION K - 73
2sas_*_482sas   *     CACALCIUM ION D - 74
2sas_*_482sas   *     CACALCIUM ION D - 75
2sas_*_482sas   *     CACALCIUM ION V - 76
2sas_*_482sas   *     CACALCIUM ION V - 77
2sas_*_482sas   *     CACALCIUM ION S - 78
2scp_A_22scp   A     CACALCIUM ION I - 15
2scp_A_22scp   A     CACALCIUM ION D - 16
2scp_A_22scp   A     CACALCIUM ION F - 17
2scp_A_22scp   A     CACALCIUM ION D - 18
2scp_A_22scp   A     CACALCIUM ION K - 19
2scp_A_22scp   A     CACALCIUM ION D - 20
2scp_A_22scp   A     CACALCIUM ION G - 21
2scp_A_22scp   A     CACALCIUM ION A - 22
2scp_A_22scp   A     CACALCIUM ION I - 23
2scp_A_952scp   A     CACALCIUM ION V - 103
2scp_A_952scp   A     CACALCIUM ION D - 104
2scp_A_952scp   A     CACALCIUM ION T - 105
2scp_A_952scp   A     CACALCIUM ION N - 106
2scp_A_952scp   A     CACALCIUM ION E - 107
2scp_A_952scp   A     CACALCIUM ION D - 108
2scp_A_952scp   A     CACALCIUM ION N - 109
2scp_A_952scp   A     CACALCIUM ION N - 110
2scp_A_952scp   A     CACALCIUM ION I - 111
2scp_A_952scp   A     CACALCIUM ION S - 112
2scp_A_1302scp   A     CACALCIUM ION I - 137
2scp_A_1302scp   A     CACALCIUM ION D - 138
2scp_A_1302scp   A     CACALCIUM ION T - 139
2scp_A_1302scp   A     CACALCIUM ION N - 140
2scp_A_1302scp   A     CACALCIUM ION N - 141
2scp_A_1302scp   A     CACALCIUM ION L - 144
2scp_A_1302scp   A     CACALCIUM ION L - 145
PDB Site Annotated loops in this subclass
LoopPDBChainSiteResidue
1aui_B_161aui   B CA1CALCIUM BINDING SITE.D - 30
1aui_B_161aui   B CA1CALCIUM BINDING SITE.D - 32
1aui_B_161aui   B CA1CALCIUM BINDING SITE.S - 34
1aui_B_161aui   B CA1CALCIUM BINDING SITE.S - 36
1aui_B_541aui   B CA2CALCIUM BINDING SITE.D - 62
1aui_B_541aui   B CA2CALCIUM BINDING SITE.D - 64
1aui_B_541aui   B CA2CALCIUM BINDING SITE.N - 66
1aui_B_541aui   B CA2CALCIUM BINDING SITE.E - 68
1aui_B_871aui   B CA3CALCIUM BINDING SITE.D - 99
1aui_B_871aui   B CA3CALCIUM BINDING SITE.D - 101
1aui_B_871aui   B CA3CALCIUM BINDING SITE.D - 103
1aui_B_871aui   B CA3CALCIUM BINDING SITE.Y - 105
1aui_B_1251aui   B CA4CALCIUM BINDING SITE.D - 140
1aui_B_1251aui   B CA4CALCIUM BINDING SITE.D - 142
1aui_B_1251aui   B CA4CALCIUM BINDING SITE.D - 144
1aui_B_1251aui   B CA4CALCIUM BINDING SITE.R - 146
1ig5_A_461ig5   A MUMMG BINDING EF-HAND LOOP.D - 54
1ig5_A_461ig5   A MUMMG BINDING EF-HAND LOOP.N - 56
1ig5_A_461ig5   A MUMMG BINDING EF-HAND LOOP.D - 58
1ig5_A_461ig5   A MUMMG BINDING EF-HAND LOOP.E - 60
1mr8_A_511mr8   A EF2CALCIUM BINDING SITE IN EF HANDD - 59
1mr8_A_511mr8   A EF2CALCIUM BINDING SITE IN EF HANDN - 61
1mr8_A_511mr8   A EF2CALCIUM BINDING SITE IN EF HANDD - 63
1mr8_A_511mr8   A EF2CALCIUM BINDING SITE IN EF HANDA - 65

Clusters included in this Subclass
CLUSTER: HE.6.3