ArchDB - Biological DataBase of Protein Loops

Information on SUBCLASS 6.22.1

Subclass Accession number: 4112
Subclass: 6.22.1

Type: AR beta-beta link
DB: ArchDB95

Image coordinates:

Consensus coordinates:

Number of loops: 4

Average sequence ID (%) : 8.3 +/- 10.8
Average RMSD (Å) : 1.150 +/- 0.480

Consensus geometry

d (Å): 21

delta (°): 0-45

theta (°): 45-90

rho (°): 45-90

Consensus Sequence:	hpXXXppXhp
(φψ)-conformation:	bbppppppbb

Pattern:	[GIVY]	x	x	x	[NSV]	x	[ADEK]	x	x	x	x	[IVW]
Conservation:	-1.083	0.180	-0.938	-0.068	-0.368	-0.621	0.802	1.512	-0.068	-0.309	-1.083	2.046

Loops included in this Subclass

Loop	PDB	Chain	Start	End	Sequence	Sec Struct	Ramachandran
1ccz_A_86	1ccz	A	92	103	VLEMVSKPMIYW	EE------EEEE	bbxxxxxxbbbb
1g0x_A_83	1g0x	A	83	94	GRSESSDPLELV	EE------EEEE	ebxxxxxxbxxb
1n0u_A_554	1n0u	A	556	567	ISPPVVAYRETV	EE------EEEE	bbxpxxxbbbbb
1qqr_A_242	1qqr	A	243	254	YRVKNREQAYRI	EE----B--EEE	bbxpxbxxxbbx

PDB ligands within a cut-off distance of 6 Å in this subclass

Loop	PDB	Chain	Ligands	Residue
1ccz_A_86	1ccz	A	NAGN-ACETYL-D-GLUCOSAMINE	E - 104
1n0u_A_554	1n0u	A	SO1[1R-(1.ALPHA.,3A.BETA.,4.BETA.,4A.BETA.,7.BETA., 7A.ALPHA.,8A.BETA.)]8A-[(6-DEOXY-4-O-METHYL-BETA-D-ALTROPYRANOSYLOXY)METHYL]-4-FORMYL-4,4A,5,6,7,7A,8,8A-OCTAHYDRO-7-METHYL-3-(1-METHYLETHYL)-1,4-METHANO-S-INDACENE-3A(1H)-CARBOXYLIC ACID	P - 559
1n0u_A_554	1n0u	A	SO1[1R-(1.ALPHA.,3A.BETA.,4.BETA.,4A.BETA.,7.BETA., 7A.ALPHA.,8A.BETA.)]8A-[(6-DEOXY-4-O-METHYL-BETA-D-ALTROPYRANOSYLOXY)METHYL]-4-FORMYL-4,4A,5,6,7,7A,8,8A-OCTAHYDRO-7-METHYL-3-(1-METHYLETHYL)-1,4-METHANO-S-INDACENE-3A(1H)-CARBOXYLIC ACID	V - 560
1n0u_A_554	1n0u	A	SO1[1R-(1.ALPHA.,3A.BETA.,4.BETA.,4A.BETA.,7.BETA., 7A.ALPHA.,8A.BETA.)]8A-[(6-DEOXY-4-O-METHYL-BETA-D-ALTROPYRANOSYLOXY)METHYL]-4-FORMYL-4,4A,5,6,7,7A,8,8A-OCTAHYDRO-7-METHYL-3-(1-METHYLETHYL)-1,4-METHANO-S-INDACENE-3A(1H)-CARBOXYLIC ACID	V - 561
1n0u_A_554	1n0u	A	SO1[1R-(1.ALPHA.,3A.BETA.,4.BETA.,4A.BETA.,7.BETA., 7A.ALPHA.,8A.BETA.)]8A-[(6-DEOXY-4-O-METHYL-BETA-D-ALTROPYRANOSYLOXY)METHYL]-4-FORMYL-4,4A,5,6,7,7A,8,8A-OCTAHYDRO-7-METHYL-3-(1-METHYLETHYL)-1,4-METHANO-S-INDACENE-3A(1H)-CARBOXYLIC ACID	A - 562
1n0u_A_554	1n0u	A	SO1[1R-(1.ALPHA.,3A.BETA.,4.BETA.,4A.BETA.,7.BETA., 7A.ALPHA.,8A.BETA.)]8A-[(6-DEOXY-4-O-METHYL-BETA-D-ALTROPYRANOSYLOXY)METHYL]-4-FORMYL-4,4A,5,6,7,7A,8,8A-OCTAHYDRO-7-METHYL-3-(1-METHYLETHYL)-1,4-METHANO-S-INDACENE-3A(1H)-CARBOXYLIC ACID	Y - 563
1n0u_A_554	1n0u	A	SO1[1R-(1.ALPHA.,3A.BETA.,4.BETA.,4A.BETA.,7.BETA., 7A.ALPHA.,8A.BETA.)]8A-[(6-DEOXY-4-O-METHYL-BETA-D-ALTROPYRANOSYLOXY)METHYL]-4-FORMYL-4,4A,5,6,7,7A,8,8A-OCTAHYDRO-7-METHYL-3-(1-METHYLETHYL)-1,4-METHANO-S-INDACENE-3A(1H)-CARBOXYLIC ACID	R - 564

Clusters included in this Subclass

CLUSTER: AR.6.126