ArchDB - Biological DataBase of Protein Loops

Grup de Recerca en Informàtica Biomèdica

Information on SUBCLASS 7.11.1

Subclass Accession number: 4152
Subclass: 7.11.1

PSSM

Type: AR beta-beta link
DB: ArchDB95

Image coordinates:

Rasmol PDB

Jmol PDB

Consensus coordinates:

Rasmol PDB

Jmol PDB

Number of loops: 7

Average sequence ID (%) : 27.2 +/- 29.6
Average RMSD (Å) : 0.829 +/- 0.304

Consensus geometry

d (Å): 19

delta (°): 90-135

theta (°): 90-135

rho (°): 90-135

Consensus Sequence:	hpCpXphhXhX
(φψ)-conformation:	bpaappbppbb

Pattern:	[ADV]	[afy]	[DKPS]	[CS]	[ans]	[ant]	[ADNRST]	[ly]	[FIP]	[dsv]	[FIL]	[CST]	[FIKV]	[egkst]
Conservation:	-0.389	-0.298	-0.150	3.061	0.070	-0.544	-0.340	-0.128	-0.481	-1.015	0.685	0.657	-0.309	-0.821

Loops included in this Subclass

Loop	PDB	Chain	Start	End	Sequence	Sec Struct	Ramachandran
1bxo_A_244	1bxo	A	246	259	VFDCSTNLPDFSVS	EE-TT-----EEEE	bbxaapxxxxbbbx
1dy2_A_233	1dy2	A	234	247	AYSCANRLIVLCIE	EEETTS-BB-EEEE	xbxaaxxbxbbbbx
1ibq_A_247	1ibq	A	247	260	VFSCSTDLPDFTVV	EEETT-----EEEE	bbxaaxbxwxbxbx
1izd_A_245	1izd	A	247	260	VFPSSASLPDFSVT	EEETT-----EEEE	bbpaapxbxxbbbx
1k9i_A_363	1k9i	A	366	379	DDKCNLAKFWICKK	EE-TTS-BB-EEEE	xbxaaxxbxbbxbb
1koe_*_292	1koe	-	293	306	AASCHNSYIVLCIE	EEETTS-BB-EEEE	xbpaaxbbxbbbbx
1oew_A_249	1oew	A	251	264	VFPCSATLPSFTFG	EEETT-----EEEE	bbxaaxbxxxbbbx

PDB ligands within a cut-off distance of 6 Å in this subclass

Loop	PDB	Chain	Ligands	Residue
1ibq_A_247	1ibq	A	ZNZINC ION	D - 256
1k9i_A_363	1k9i	A	MANALPHA-D-MANNOSE	G - 363
1k9i_A_363	1k9i	A	MANALPHA-D-MANNOSE	N - 365
1k9i_A_363	1k9i	A	CACALCIUM ION	N - 365
1k9i_A_363	1k9i	A	MANALPHA-D-MANNOSE	D - 366
1k9i_A_363	1k9i	A	CACALCIUM ION	D - 366
1k9i_A_363	1k9i	A	MANALPHA-D-MANNOSE	D - 367
1k9i_A_363	1k9i	A	CACALCIUM ION	D - 367
1k9i_A_363	1k9i	A	MANALPHA-D-MANNOSE	K - 368
1k9i_A_363	1k9i	A	MANALPHA-D-MANNOSE	L - 371
1oew_A_249	1oew	A	GOLGLYCEROL	F - 252
1oew_A_249	1oew	A	GOLGLYCEROL	P - 253
1oew_A_249	1oew	A	GOLGLYCEROL	C - 254
1oew_A_249	1oew	A	GOLGLYCEROL	S - 255
1oew_A_249	1oew	A	GOLGLYCEROL	A - 256

PDB Site Annotated loops in this subclass

Loop	PDB	Chain	Site	Residue
1oew_A_249	1oew	A	AC3GOL BINDING SITE FOR CHAIN A	C - 254

Clusters included in this Subclass

CLUSTER: AR.7.36

CLUSTER: AR.8.64