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Information on SUBCLASS 6.6.1
Subclass Accession number: 416
Subclass: 6.6.1 PSSM
Type: HE alpha-beta
DB: ArchDB40

Image coordinates: Rasmol PDB Jmol PDB
Consensus coordinates: Rasmol PDB Jmol PDB

Conserved Annotation
EC : 1.1 (>75 %)  1.1.1 (>75 %)  
GO : GO:0005489 (>75 %)  
SCOP : 52832 (>75 %)  52833 (>75 %)  52834 (>75 %)  
 Number of loops: 10

Average sequence ID (%) : 22.9 +/- 19.1
Average RMSD (Å) : 0.680 +/- 0.286

Consensus geometry
d (Å): 13 delta (°): 45-90 theta (°): 90-135 rho (°): 0-45
Consensus Sequence: XhchXXGXXV
(φψ)-conformation: aalpbplpbb
Pattern: x[AGLMPV][ehkmqr]x[AGLMV][ADG][ILPV]x[EKPQT][DGN][adekst]x[IV][AILT]
Conservation:-1.278-0.509-0.555-1.005-0.1360.8340.519-0.8670.1621.750-0.477-0.6692.0650.163
Loops included in this Subclass
LoopPDBChainStartEndSequenceSec StructRamachandran
1b9m_A_1641b9m   A166179SGARLGLDEGKEVLHHHHTT-STT-EEEaaaaavxbpvpxbb
1dl5_A_611dl5   A6780FMEWVGLDKGMRVLHHHHTT--TT-EEEaaaaavpbpvxbbb
1fx7_A_1781fx7   A183196RLKDAGVVPNARVTHHHHTT--TT-EEEaaaaavxbpvxxbb
1i9g_A_851i9g   A91104IVHEGDIFPGARVLHHHHTT--TT-EEEaaaaalxxpvxbbb
1ixk_A_1101ixk   A110123PPVALDPKPGEIVAHHHHH---TT-EEEaaaaalxbpvxxbb
1o54_A_861o54   A92105IAMMLDVKEGDRIIHHHHTT--TT-EEEaaaaalxbpvxbbx
1o69_A_561o69   A6376ALRVAGVKQDDIVLHHHHTT--TT-EEEaaaaavxbpvxxbx
1opd_*_471opd   -4962KLQTLGLTQGTVVTHHHHT---TT-EEEaaaaalxxpvxxbb
1pch_*_471pch   -4962NVMAMAIKTGTEITHHHHH---TT-EEEaaaaalxbpvxxbb
1ptf_*_471ptf   -4962GVMSLGVGQGSDVTHHHHH---TT-EEEaaaaavxbpvxxbb
PDB ligands within a cut-off distance of 6 Å in this subclass
LoopPDBChainLigandsResidue
1dl5_A_611dl5   A     SAHS-ADENOSYL-L-HOMOCYSTEINE M - 64
1dl5_A_611dl5   A     SAHS-ADENOSYL-L-HOMOCYSTEINE E - 81
1dl5_A_611dl5   A     SAHS-ADENOSYL-L-HOMOCYSTEINE I - 82
1i9g_A_851i9g   A     SAMS-ADENOSYLMETHIONINE E - 105
1i9g_A_851i9g   A     SAMS-ADENOSYLMETHIONINE A - 106
1ixk_A_1101ixk   A     MSESELENOMETHIONINE P - 110
1ixk_A_1101ixk   A     MSESELENOMETHIONINE P - 111
1ixk_A_1101ixk   A     MSESELENOMETHIONINE V - 112
1ixk_A_1101ixk   A     MSESELENOMETHIONINE A - 113
1ixk_A_1101ixk   A     MSESELENOMETHIONINE P - 116
1ixk_A_1101ixk   A     MSESELENOMETHIONINE K - 117
1ixk_A_1101ixk   A     MSESELENOMETHIONINE P - 118
1ixk_A_1101ixk   A     MSESELENOMETHIONINE G - 119
1ixk_A_1101ixk   A     MSESELENOMETHIONINE E - 120
1ixk_A_1101ixk   A     MSESELENOMETHIONINE I - 121
1ixk_A_1101ixk   A     MSESELENOMETHIONINE V - 122
1ixk_A_1101ixk   A     MSESELENOMETHIONINE A - 123
1o69_A_561o69   A     X04(2-AMINO-4-FORMYL-5-HYDROXY-6-METHYLPYRIDIN-3-YL) METHYL DIHYDROGEN PHOSPHATE A - 56
1o69_A_561o69   A     X04(2-AMINO-4-FORMYL-5-HYDROXY-6-METHYLPYRIDIN-3-YL) METHYL DIHYDROGEN PHOSPHATE T - 57
1o69_A_561o69   A     X04(2-AMINO-4-FORMYL-5-HYDROXY-6-METHYLPYRIDIN-3-YL) METHYL DIHYDROGEN PHOSPHATE A - 58
1o69_A_561o69   A     X04(2-AMINO-4-FORMYL-5-HYDROXY-6-METHYLPYRIDIN-3-YL) METHYL DIHYDROGEN PHOSPHATE L - 60

Clusters included in this Subclass
CLUSTER: HE.5.155
CLUSTER: HE.6.15