ArchDB - Biological DataBase of Protein Loops

Information on SUBCLASS 8.19.1

Subclass Accession number: 4208
Subclass: 8.19.1

Type: AR beta-beta link
DB: ArchDB95

Image coordinates:

Consensus coordinates:

Conserved Annotation
EC : - (>75 %)  1 (>75 %)  3 (>75 %)
GO : GO:0004518 (>75 %)  GO:0004519 (>75 %)  GO:0016788 (>75 %)
SCOP : 55297 (>75 %)  55298 (>75 %)  55299 (>75 %)

Number of loops: 4

Average sequence ID (%) : 61.6 +/- 14.4
Average RMSD (Å) : 0.150 +/- 0.058

Consensus geometry

d (Å): 9

delta (°): 90-135

theta (°): 135-180

rho (°): 315-360

Consensus Sequence:	XVAXLPXchXhE
(φψ)-conformation:	bbabbpllpabb

Pattern:	[A]	[R]	[AS]	[AC]	[VY]	[AEQ]	[V]	[A]	[AR]	[L]	[P]	[KL]	[DG]	[AGSV]	x	[IMV]	[E]	[IM]	[E]	[AV]	[I]	[A]	[ALV]
Conservation:	0.549	1.154	-0.340	0.350	-0.600	-0.914	0.549	0.549	-0.802	0.549	2.365	-0.961	-0.262	-1.494	-1.922	-0.295	1.154	-0.224	1.154	-0.606	0.549	0.549	-1.052

Loops included in this Subclass

Loop	PDB	Chain	Start	End	Sequence	Sec Struct	Ramachandran
1jd1_A_104	1jd1	A	104	126	ARSCVAVAALPLGVDMEMEAIAA	EEEEEE-S--GGG-SEEEEEEEE	xbbbbbbabbpvvxabbbbbbbb
1nq3_A_106	1nq3	A	106	128	ARAAYQVAALPKGGRVEIEAIAV	EEEEEE-S--GGG-SEEEEEEEE	xbbbbxbabbxlvxabbbbbbbb
1qah_A_105	1qah	A	105	127	ARAAYQVAALPKGSRIEIEAIAV	EEEEEE-S--GGG-SEEEEEEEE	xbbbbxbabbpvvxabbbxbbbb
1qd9_A_101	1qd9	A	101	123	ARSCVEVARLPKDALVEIEVIAL	EEEEEE-S--GGG-SEEEEEEEE	xbbbbxbabbpllxabbbbbbbx

PDB ligands within a cut-off distance of 6 Å in this subclass

Loop	PDB	Chain	Ligands	Residue
1qd9_A_101	1qd9	A	HGMERCURY (II) ION	R - 102
1qd9_A_101	1qd9	A	HGMERCURY (II) ION	C - 104
1qd9_A_101	1qd9	A	HGMERCURY (II) ION	V - 105
1qd9_A_101	1qd9	A	HGMERCURY (II) ION	E - 106

Clusters included in this Subclass

CLUSTER: AR.8.73