ArchDB - Biological DataBase of Protein Loops

Grup de Recerca en Informàtica Biomèdica

Information on SUBCLASS 9.1.2

Subclass Accession number: 4230
Subclass: 9.1.2

PSSM

Type: AR beta-beta link
DB: ArchDB95

Image coordinates:

Rasmol PDB

Jmol PDB

Consensus coordinates:

Rasmol PDB

Jmol PDB

Conserved Annotation
GO : GO:0005506 (>75 %)
SCOP : 53849 (>75 %) 53850 (>75 %) 53888 (>75 %)

Number of loops: 5

Average sequence ID (%) : 48.7 +/- 28.2
Average RMSD (Å) : 0.240 +/- 0.055

Consensus geometry

d (Å): 17

delta (°): 90-135

theta (°): 45-90

rho (°): 90-135

Consensus Sequence:	XXVXphppCphAX
(φψ)-conformation:	bpaaaaaabbaeb

Pattern:	[r]	[akq]	[np]	[v]	x	[dens]	[ay]	[kqr]	[est]	[c]	[hn]	[lw]	[a]	x	[av]
Conservation:	0.984	-0.737	-0.093	0.512	-1.057	-0.519	-0.279	-0.166	-0.637	2.869	0.480	-0.336	0.512	-1.158	-0.377

Loops included in this Subclass

Loop	PDB	Chain	Start	End	Sequence	Sec Struct	Ramachandran
1ce2_A_578	1ce2	A	578	592	RKPVTEAQSCHLAVA	EEETT-TTTS-SEEE	bbxaaaaaabbaebx
1gv8_A_236	1gv8	A	236	250	RQPVDSYKTCNWARV	EEEGGGGGGS-SEEE	bbxaaaaaabbaexb
1iej_A_233	1iej	A	233	247	RQPVDNYKTCNWARV	EEEGGGTTTS-SEEE	bbxaaaaaabbaebb
1iq7_A_575	1iq7	A	575	589	RANVMDYRECNLAEV	EEEGGGGGGS-SEEE	bbxaaaaaabbaexx
1nkx_A_578	1nkx	A	578	592	RKPVTEAQSCHLAVA	EE-GGGGGGS-SEEE	bbxaaaaaabbaebb

PDB ligands within a cut-off distance of 6 Å in this subclass

Loop	PDB	Chain	Ligands	Residue
1ce2_A_578	1ce2	A	FEFE (III) ION	A - 592
1ce2_A_578	1ce2	A	CO3CARBONATE ION	A - 592
1gv8_A_236	1gv8	A	GLYGLYCINE	V - 250
1gv8_A_236	1gv8	A	CO3CARBONATE ION	V - 250
1gv8_A_236	1gv8	A	FEFE (III) ION	V - 250
1iej_A_233	1iej	A	FEFE (III) ION	V - 247
1iej_A_233	1iej	A	CO3CARBONATE ION	V - 247
1iej_A_233	1iej	A	FEFE (III) ION	A - 248
1nkx_A_578	1nkx	A	NAGN-ACETYL-D-GLUCOSAMINE	V - 581
1nkx_A_578	1nkx	A	NAGN-ACETYL-D-GLUCOSAMINE	T - 582
1nkx_A_578	1nkx	A	NAGN-ACETYL-D-GLUCOSAMINE	E - 583
1nkx_A_578	1nkx	A	NAGN-ACETYL-D-GLUCOSAMINE	A - 584
1nkx_A_578	1nkx	A	NAGN-ACETYL-D-GLUCOSAMINE	Q - 585
1nkx_A_578	1nkx	A	ZNZINC ION	Q - 585
1nkx_A_578	1nkx	A	ZNZINC ION	H - 588
1nkx_A_578	1nkx	A	ZNZINC ION	A - 590
1nkx_A_578	1nkx	A	ZNZINC ION	V - 591

Clusters included in this Subclass

CLUSTER: AR.9.37